Motif IL_21304.1 Version IL_21304.1 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XZM_006 | 2XZM | 0.9955 | 3 | A | 18S RRNA | U | 57 | G | 58 | G | 62 | * | C | 83 | U | 84 | G | 85 | ncWW | ncWW | cWW | ||
| 2 | IL_3U5F_006 | 3U5F | 1.0088 | 3 | 6 | 18S rRNA | U | 58 | C | 59 | G | 63 | * | C | 87 | U | 88 | G | 89 | cWW | ncWH | cWW | ||
| 3 | IL_3U5H_085 | 3U5H | 0.7874 | 4 | 5 | 25S rRNA | A | 1901 | G | 1902 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW | |||
| 4 | IL_4A1B_081 | 4A1B | 0.8050 | 4 | 1 | 26S RRNA | A | 1925 | G | 1926 | G | 1930 | * | C | 2328 | U | 2329 | U | 2331 | cWW | cWW | |||
| 5 | IL_1S72_062 | 1S72 | 0.7552 | 4 | 0 | LSU rRNA | A | 1747 | U | 1748 | G | 1752 | * | C | 2031 | U | 2032 | U | 2034 | cWW | cWW | |||
| 6 | IL_3V2F_079 | 3V2F | 0.1804 | 1 | A | 23S Ribosomal RNA | C | 2081 | A | 2082 | G | 2083 | * | C | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | ||
| 7 | IL_1S72_076 | 1S72 | 0.1653 | 1 | 0 | LSU rRNA | C | 2122 | A | 2123 | G | 2124 | * | C | 2269 | G | 2270 | G | 2272 | cWW | tHS | cWW | ||
| 8 | IL_3V2F_012 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | C | 288 | A | 289 | G | 290 | * | U | 350 | G | 351 | G | 353 | cWW | tHS | cWW | ||
| 9 | IL_2QBG_082 | 2QBG | 0.2127 | 1 | B | 23S rRNA | U | 2081 | A | 2082 | G | 2083 | * | U | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | ||
| 10 | IL_3U5H_100 | 3U5H | 0.2684 | 1 | 5 | 25S rRNA | U | 2423 | A | 2424 | G | 2425 | * | U | 2604 | G | 2605 | G | 2607 | cWW | tHS | cWW | ||
| 11 | IL_2ZJR_078 | 2ZJR | 0.2741 | 1 | X | LSU rRNA | U | 2064 | A | 2065 | G | 2066 | * | C | 2215 | G | 2216 | G | 2218 | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCGG*CUGU | 2 |
| CAG*CGGG | 2 |
| UAG*UGGG | 2 |
| UGCCAG*CUG | 1 |
| UCUAAG*CUG | 1 |
| AUUCGG*CUGU | 1 |
| CAG*UGGG | 1 |
| UAG*CGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GG | 6 |
| GUCG*UG | 2 |
| GCCA*U | 1 |
| CUAA*U | 1 |
| UUCG*UG | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_21304.1 | Only in the parent motif |
|---|---|---|---|
| IL_48187.1 Compare | IL_1S72_076, IL_2ZJR_078, IL_2QBG_082, IL_3U5H_100 | IL_2XZM_006, IL_3V2F_079, IL_3U5F_006, IL_3U5H_085, IL_3V2F_012, IL_1S72_062, IL_4A1B_081 | IL_3UXR_012, IL_2ZJR_081, IL_3U5H_104, IL_1S72_078, IL_3UXR_086, IL_3UXR_079, IL_4A1B_102 |
| IL_99515.1 Compare | IL_3U5H_085, IL_1S72_062, IL_4A1B_081 | IL_2XZM_006, IL_2QBG_082, IL_3V2F_079, IL_3U5F_006, IL_2ZJR_078, IL_3U5H_100, IL_1S72_076, IL_3V2F_012 | IL_2ZJR_023, IL_3U5H_117, IL_3U5H_110, IL_2QBG_098, IL_2ZJR_092, IL_1S72_087, IL_4A1B_114, IL_3UXR_097 |
| IL_13740.1 Compare | IL_3U5F_006, IL_2XZM_006 | IL_2QBG_082, IL_3V2F_079, IL_2ZJR_078, IL_3U5H_085, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_1S72_062, IL_4A1B_081 | IL_1S72_085 |
Children motifs
| Child motif | Common motif instances | Only in IL_21304.1 | Only in the child motif |
|---|---|---|---|
| IL_21304.2 Compare | IL_2XZM_006, IL_2QBG_082, IL_3V2F_079, IL_3U5H_085, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_1S72_062, IL_4A1B_081 | IL_2ZJR_078, IL_3U5F_006 | IL_4IOA_077, IL_2XZM_064 |
| IL_41341.1 Compare | IL_3U5F_006 | IL_2XZM_006, IL_2QBG_082, IL_3V2F_079, IL_2ZJR_078, IL_3U5H_085, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_1S72_062, IL_4A1B_081 |
Coloring options: