Motif IL_50587.1 Version IL_50587.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_174 | 4V8P | 0.6250 | 0 | D1 | C | 516 | A | 517 | G | 518 | A | 519 | A | 520 | C | 521 | * | G | 457 | G | 458 | G | 459 | A | 460 | A | 461 | G | 462 | cWW | ntHS | cWW | ||||||
| 2 | IL_2XXA_008 | 2XXA | 0.1788 | 0 | F | U | 40 | C | 41 | A | 42 | G | 43 | A | 44 | G | 45 | * | C | 54 | A | 55 | G | 56 | C | 57 | A | 58 | G | 59 | cWW | ntSH | ntHW | tHS | cWw | cWW | |||
| 3 | IL_3LQX_002 | 3LQX | 0.0000 | 0 | tSH-tHW-tHS-cWW | B | U | 146 | C | 147 | A | 148 | G | 149 | G | 150 | U | 151 | * | A | 160 | A | 161 | G | 162 | C | 163 | A | 164 | G | 165 | cWW | tSH | tHW | tHS | cWW | cWW | ||
| 4 | IL_1LNT_002 | 1LNT | 0.1413 | 0 | tSH-tHW-tHS-cWW | A+B | U | 4 | C | 5 | A | 6 | G | 7 | G | 8 | U | 9 | * | A | 16 | A | 17 | G | 18 | C | 19 | A | 20 | G | 21 | cWW | tSH | tHW | tHS | cWW | cWW | ||
| 5 | IL_1MFQ_007 | 1MFQ | 0.1808 | 0 | tSH-tHW-tHS-cWW | A | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | * | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | cWW | tWH | ntSH | tHW | tHS | cWW | cWW | |
| 6 | IL_4V8P_202 | 4V8P | 0.5257 | 0 | D1 | U | 1078 | A | 1079 | A | 1080 | A | 1081 | U | 1082 | U | 1083 | * | A | 1018 | G | 1019 | G | 1020 | U | 1021 | A | 1022 | A | 1023 | cWW | tSH | tHW | cBW | cWW | cSH | |||
| 7 | IL_4EYA_005 | 4EYA | 0.8356 | 0 | Tandem non-canonical cWW pairs with near WC pairs | g+h | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | * | C | 5 | C | 6 | U | 7 | U | 8 | G | 9 | G | 10 | ncSW | ncWW | ncWw | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAGGU*AAGCAG | 2 |
| CAGAAC*GGGAAG | 1 |
| UCAGAG*CAGCAG | 1 |
| CCAGGU*GAGCAG | 1 |
| UAAAUU*AGGUAA | 1 |
| CCUUGG*CCUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAGG*AGCA | 3 |
| AGAA*GGAA | 1 |
| CAGA*AGCA | 1 |
| AAAU*GGUA | 1 |
| CUUG*CUUG | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW-tHS-cWW (3)
- (3)
- Tandem non-canonical cWW pairs with near WC pairs (1)
- Basepair signature
- cWW-tSH-tWH-tHW-tHS-cWW-cWW
- Heat map statistics
- Min 0.14 | Avg 0.48 | Max 0.98
Coloring options: