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Motif IL_51629.2 Version IL_51629.2 of this group appears in releases 3.80 to 3.83

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_4P3U_0014P3U0.33950Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcWW
2 IL_8C3A_4078C3A0.37331Isolated cWH basepairCM SSU rRNAG285A286U287*A263U265C266cWWcWW
3 IL_5M0H_0025M0H0.50002Multiple bulged bases, near cWWAASH1 E3 (42 nt-TL/TLR)G8U11C12*G34A35C36ncWWcWWcWW
4 IL_8C3A_4688C3A0.43280Isolated non-canonical cWW pairCM SSU rRNAU1483U1484G1485*C1496U1497G1498cWWcWW
5 IL_4WF9_0184WF90.46020Isolated non-canonical cWW pairX LSU rRNAU705U706G707*U638U639G640cWWcWW
6 IL_4KYY_0024KYY0.44980Isolated non-canonical cWW pairB+ARNA 17-merU8U9G10*U8U9G10cWWcWW
7 IL_4V88_4704V880.37450Isolated non-canonical cWW pairA6 SSU rRNAU1665U1666A1667*U1734U1735G1736cWWcWW
8 IL_8C3A_4778C3A0.36580Isolated non-canonical cWW pairCM SSU rRNAU1652U1653A1654*U1721U1722G1723ncWWncWwcWW
9 IL_7A0S_1077A0S0.43790Isolated non-canonical cWW pairY 5S rRNAU82C83G84*C97C98G99cWWncBWcWW
10 IL_5TBW_0165TBW0.35650Isolated non-canonical cWW pair1 LSU rRNAU429U430U431*A628U629A630cWWcWW
11 IL_4Y1M_0054Y1M0.31320Isolated non-canonical cWW pairBE. coli yybP-ykoY riboswitchA103U104A105*U4U5U6cWWncWwcWW
12 IL_8AF0_0028AF00.25000Isolated cWH basepairD+CRNA (19-mer)G34U35C36*G34U35C36cWWcHWcWW
13 IL_2R8S_0052R8S0.33845cWH basepair with bulged basesRP4-P6 RNA RIBOZYME DOMAINU182A187C189*G134U135A136cWWcHWcWW
14 IL_7A0S_0427A0S0.29070Isolated non-canonical cWW pairX LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
15 IL_4V88_4534V880.31610Isolated cWH basepairA6 SSU rRNAU1290G1291G1292*C1323G1324A1325cWWcHWcWW
16 IL_7A0S_0267A0S0.30410Isolated non-canonical cWW pairX LSU rRNAC864A865U866*A936C937G938cWWcWWcWW
17 IL_8C3A_4138C3A0.22480Isolated cWH basepairCM SSU rRNAG387G388A389*U404A405C406cWWcHWcWW
18 IL_4V88_4054V880.21250Isolated cWH basepairA6 SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
19 IL_4KR9_0024KR90.24590XRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
20 IL_4KR9_0014KR90.24400MRNA (39-MER)G28U29C30*G6A7U8cWWcWWcWW
21 IL_5TBW_1105TBW0.19940Isolated non-canonical cWW pair1 LSU rRNAC2889A2890U2891*G2912C2913G2914cWWncWWacWW
22 IL_8C3A_1188C3A0.17600Isolated non-canonical cWW pair1 LSU rRNAC2861A2862U2863*G2884C2885G2886cWWncWWcWW
23 IL_2ZNI_0012ZNI0.23200Cbacterial tRNAG29G30A31*U39U40C41cWWncWWacWW
24 IL_5F5F_0015F5F0.31570Isolated cWH basepairBRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
25 IL_5F5F_0035F5F0.29960Isolated cWH basepairFRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
26 IL_4KQ0_0024KQ00.18920Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
27 IL_4KQ0_0044KQ00.18870Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
28 IL_6RA4_0026RA40.22870Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
29 IL_3D0M_0013D0M0.26820Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
30 IL_3D0M_0023D0M0.26820Isolated cWH basepairXRNA (16-mer)U7||||16_545G8||||16_545A9||||16_545*U10G11A12cWWcHWncWW
31 IL_2H1M_0032H1M0.25750Isolated cWH basepairB+ARNA (16-mer)A21G22U23*A10A11U12cWWncHWcWW
32 IL_2H1M_0022H1M0.22870Isolated cWH basepairA+BRNA (16-mer)A5G6U7*A26A27U28cWWncHWcWW
33 IL_5J7L_0115J7L0.25600Isolated cWH basepairAA SSU rRNAC176G177C178*G144G145G146cWWcHWcWW
34 IL_4WF9_0454WF90.25050Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
35 IL_3R1D_0023R1D0.25780Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
36 IL_4KQ0_0054KQ00.21770Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
37 IL_4KQ0_0014KQ00.21740Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
38 IL_6IA2_0036IA20.26730Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
39 IL_4J50_0014J500.20770Isolated cWH basepairB+ARNA (19-mer)C13A14G15*C7A8G9cWWcWW
40 IL_4J50_0034J500.20730Isolated cWH basepairA+BRNA (19-mer)C13A14G15*C7A8G9cWWcWW
41 IL_3W3S_0033W3S0.24530Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
42 IL_3CZW_0023CZW0.25040Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
43 IL_3CZW_0013CZW0.25040Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
44 IL_3SJ2_0033SJ20.24970Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
45 IL_3R1C_0183R1C0.22740Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
46 IL_3R1C_0123R1C0.24070Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
47 IL_3R1C_0113R1C0.25300Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
48 IL_3R1C_0173R1C0.24650Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
49 IL_3SJ2_0023SJ20.25320Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
50 IL_3R1C_0313R1C0.24930Isolated cWH basepairF+ERNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
51 IL_4E5C_0014E5C0.25750Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
52 IL_3SJ2_0013SJ20.23610Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
53 IL_3R1C_0323R1C0.21220Isolated cWH basepairF+ERNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
54 IL_4KQ0_0034KQ00.21090Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
55 IL_1L9A_0031L9A0.22360Bsignal recognition particle RNA S domainC123G124G125*C225U226G227cWWncWWcWW
56 IL_406D_002406D0.24130Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW
57 IL_3ICQ_0033ICQ0.31440ERNA (62-MER)G3G4A5*U68U69C70cWWncWWcWW
58 IL_1Y27_0011Y270.26980Isolated non-canonical cWW pairXPurine riboswitchC43A44A45*U25C26G27cWWcWWcWW
59 IL_7KJT_0017KJT0.22770Isolated non-canonical cWW pairA tRNAG2C3C4*G69C70C71cWWncWW
60 IL_1ZZ5_0021ZZ50.16090Isolated non-canonical cWW pairA+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
61 IL_1ZZ5_0041ZZ50.12170Isolated non-canonical cWW pairC+DRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
62 IL_4V88_3854V880.09640Isolated non-canonical cWW pairA6 SSU rRNAA471U472A473*U35C36U37cWWcWWcWW
63 IL_8C3A_3938C3A0.00000Isolated non-canonical cWW pairCM SSU rRNAA469U470A471*U35C36U37cWWcWWcWW
64 IL_3FOZ_0013FOZ0.17910Isolated cWH basepairDtRNA(Phe)G63A64G65*C49U50U51cWWcWW
65 IL_4V88_4274V880.18750Isolated cWH basepairA6 SSU rRNAU822G823G824*C848C849A850cWWncHWcWW
66 IL_6F4H_0016F4H0.22580Isolated cWH basepairDU1-SL2G1G2C3*G20C21C22cWWncHWcWW
67 IL_3R1D_0123R1D0.31290ERNA (11-mer)C5||||2_655G6||A||2_655G7||A||2_655*C5G6||AG7||AcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG18
UGA*UGA5
GUC*GUC4
UUG*UUG2
UUA*UUG2
GGA*UAC2
GUC*GAU2
CAU*GCG2
GGA*UUC2
UGC*GGA2
AGU*AAU2
CGC*GGG2
CAG*CAG2
AUA*UCU2
GAU*AAUC1
GAAUC*GAC1
UUG*CUG1
UCG*CCG1
UUU*AUA1
AUA*UUU1
UAAUAAGC*GUA1
CCG*CCG1
UGG*CGA1
CAU*ACG1
GGU*AGC1
CGG*CUG1
UGG*UGG1
CAA*UCG1
GCC*GCC1
GAG*CUU1
UGG*CCA1
GGC*GCC1
Non-Watson-Crick part of the motif
SequenceCounts
G*G30
U*U11
A*C4
G*A4
C*C3
G*U3
U*A2
A*A2
U*C2
G*C2
A*AU1
AAU*A1
AAUAAG*U1
A*U1

Release history

Release3.803.813.823.83
Date2024-01-312024-02-282024-03-272024-04-24
StatusUpdated, 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (40)
  • Isolated non-canonical cWW pair (19)
  • (6)
  • cWH basepair with bulged bases (1)
  • Multiple bulged bases, near cWW (1)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.29 | Max 0.77
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