Motif IL_54966.1 Version IL_54966.1 of this group appears in releases 1.10 to 1.13

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9	1-9	2-8	3-7	4-5	6-7
1	IL_4BPP_081	4BPP	0.0966	A	18S RRNA	G	1610	C	1611	C	1612	C	1613	*	G	1713	U	1714	A	1715	A	1716	C	1717	cWW	cWW	ncSW	cWW	cSH
2	IL_1FJG_055	1FJG	0.0000	A	SSU rRNA	G	1401	C	1402	C	1403	C	1404	*	G	1497	U	1498	A	1499	A	1500	C	1501	cWW	cWW	cSW	cWW	cSH
3	IL_2AW7_061	2AW7	0.0742	A	16S ribosomal RNA	G	1401	C	1402	C	1403	C	1404	*	G	1497	U	1498	A	1499	A	1500	C	1501	cWW	cWW	cSW	cWW	cSH
4	IL_3U5F_081	3U5F	0.0920	6	18S rRNA	G	1638	C	1639	C	1640	C	1641	*	G	1760	U	1761	A	1762	A	1763	C	1764	cWW	cWW	cSW	cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GCCC*GUAAC	4

Non-Watson-Crick part of the motif

Sequence	Counts
CC*UAA	4

Release history

Release	1.10	1.11	1.12	1.13
Date	2014-01-04	2014-02-01	2014-03-01	2014-03-29
Status	New id, 1 parent	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_54966.1	Only in the parent motif
IL_83451.3 Compare	IL_4BPP_081, IL_3U5F_081, IL_1FJG_055, IL_2AW7_061		IL_2AW7_010, IL_1FJG_008, IL_3CUN_001

Children motifs

Child motif	Common motif instances	Only in IL_54966.1	Only in the child motif
IL_65554.1 Compare	IL_4BPP_081, IL_3U5F_081, IL_1FJG_055, IL_2AW7_061		IL_2AW7_010, IL_1VW3_071, IL_1FJG_008, IL_3CUN_001

Annotations: (4)
Basepair signature: cWW-cWW-cSW-cSH-cWW
Heat map statistics: Min 0.07 | Avg 0.07 | Max 0.11

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