Motif IL_54966.1 Version IL_54966.1 of this group appears in releases 1.10 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-5 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_081 | 4BPP | 0.0966 | 0 | A | 18S RRNA | G | 1610 | C | 1611 | C | 1612 | C | 1613 | * | G | 1713 | U | 1714 | A | 1715 | A | 1716 | C | 1717 | cWW | cWW | ncSW | cWW | cSH |
| 2 | IL_1FJG_055 | 1FJG | 0.0000 | 0 | A | SSU rRNA | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | cWW | cSW | cWW | cSH |
| 3 | IL_2AW7_061 | 2AW7 | 0.0742 | 0 | A | 16S ribosomal RNA | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | cWW | cSW | cWW | cSH |
| 4 | IL_3U5F_081 | 3U5F | 0.0920 | 0 | 6 | 18S rRNA | G | 1638 | C | 1639 | C | 1640 | C | 1641 | * | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | cWW | cWW | cSW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCC*GUAAC | 4 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CC*UAA | 4 |
Release history
| Release | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|
| Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_54966.1 | Only in the parent motif |
|---|---|---|---|
| IL_83451.3 Compare | IL_4BPP_081, IL_3U5F_081, IL_1FJG_055, IL_2AW7_061 | IL_2AW7_010, IL_1FJG_008, IL_3CUN_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_54966.1 | Only in the child motif |
|---|---|---|---|
| IL_65554.1 Compare | IL_4BPP_081, IL_3U5F_081, IL_1FJG_055, IL_2AW7_061 | IL_2AW7_010, IL_1VW3_071, IL_1FJG_008, IL_3CUN_001 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-cSW-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.07 | Max 0.11
Coloring options: