#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4break 5 6 7 8 91-92-83-63-74-56-7
1 IL_3U5F_0813U5F0.09200618S rRNAG1638C1639C1640C1641*G1760U1761A1762A1763C1764cWWcWWcSWcWWcSH
2 IL_2AW7_0612AW70.07420A16S ribosomal RNAG1401C1402C1403C1404*G1497U1498A1499A1500C1501cWWcWWcSWcWWcSH
3 IL_1FJG_0551FJG0.00000A SSU rRNAG1401C1402C1403C1404*G1497U1498A1499A1500C1501cWWcWWcSWcWWcSH
4 IL_4BPP_0814BPP0.09660A18S RRNAG1610C1611C1612C1613*G1713U1714A1715A1716C1717cWWcWWncSWcWWcSH
5 IL_1VW3_0711VW30.50870A21S ribosomal RNAG2578A2579A2580U2581*A2468U2469A2470A2471C2472cWWcwWcWWcSH
6 IL_2AW7_0102AW70.73220A16S ribosomal RNAG227A228U229G230*C132U133G134C135C136cWWcWwcWW
7 IL_1FJG_0081FJG0.69820A SSU rRNAG227A228U229G230*C132U133A134C135C136cWWcWwcWW
8 IL_3CUN_0013CUN0.96451CRNA (92-MER)C22A23G24G25*U44A45U47G48G49cWWcWWcWBcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCCC*GUAAC4
GAAU*AUAAC1
GAUG*CUGCC1
GAUG*CUACC1
CAGG*UAUUGG1
Non-Watson-Crick part of the motif
SequenceCounts
CC*UAA4
AA*UAA1
AU*UGC1
AU*UAC1
AG*AUUG1
Annotations
  • (8)
  • Basepair signature
    cWW-cWW-cSW-cWW-cSH-cWW
    Heat map statistics
    Min 0.07 | Avg 0.49 | Max 0.97
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