Motif IL_83451.3 Version IL_83451.3 of this group appears in releases 1.5 to 1.9
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 3-7 | 4-5 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_081 | 4BPP | 0.0966 | 0 | A | 18S RRNA | G | 1610 | C | 1611 | C | 1612 | C | 1613 | * | G | 1713 | U | 1714 | A | 1715 | A | 1716 | C | 1717 | cWW | cWW | ncSW | cWW | cSH | |
| 2 | IL_1FJG_055 | 1FJG | 0.0000 | 0 | A | SSU rRNA | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | cWW | cSW | cWW | cSH | |
| 3 | IL_2AW7_061 | 2AW7 | 0.0742 | 0 | A | 16S ribosomal RNA | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | cWW | cSW | cWW | cSH | |
| 4 | IL_3U5F_081 | 3U5F | 0.0920 | 0 | 6 | 18S rRNA | G | 1638 | C | 1639 | C | 1640 | C | 1641 | * | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | cWW | cWW | cSW | cWW | cSH | |
| 5 | IL_2AW7_010 | 2AW7 | 0.7322 | 0 | A | 16S ribosomal RNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | G | 134 | C | 135 | C | 136 | cWW | cWw | cWW | |||
| 6 | IL_1FJG_008 | 1FJG | 0.6982 | 0 | A | SSU rRNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | cWW | cWw | cWW | |||
| 7 | IL_3CUN_001 | 3CUN | 0.9645 | 1 | C | RNA (92-MER) | C | 22 | A | 23 | G | 24 | G | 25 | * | U | 44 | A | 45 | U | 47 | G | 48 | G | 49 | cWW | cWW | cWB | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCC*GUAAC | 4 |
| GAUG*CUGCC | 1 |
| GAUG*CUACC | 1 |
| CAGG*UAUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CC*UAA | 4 |
| AU*UGC | 1 |
| AU*UAC | 1 |
| AG*AUUG | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 |
|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_83451.3 | Only in the parent motif |
|---|---|---|---|
| IL_83451.2 Compare | IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_3CUN_001, IL_1FJG_008, IL_1FJG_055 | IL_4BPP_081 | IL_2XZM_084 |
Children motifs
| Child motif | Common motif instances | Only in IL_83451.3 | Only in the child motif |
|---|---|---|---|
| IL_54966.1 Compare | IL_4BPP_081, IL_3U5F_081, IL_1FJG_055, IL_2AW7_061 | IL_2AW7_010, IL_1FJG_008, IL_3CUN_001 | |
| IL_46301.1 Compare | IL_2AW7_010, IL_1FJG_008 | IL_3CUN_001, IL_4BPP_081, IL_3U5F_081, IL_1FJG_055, IL_2AW7_061 | IL_3BNQ_002, IL_1NUV_002, IL_429D_002, IL_1NUV_003, IL_2QBG_108 |
| IL_31555.5 Compare | IL_3CUN_001 | IL_4BPP_081, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_1FJG_008, IL_1FJG_055 | IL_3LOA_001, IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_3FTM_001, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3BNT_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-cSW-cWW-cSH-cWW
- Heat map statistics
- Min 0.07 | Avg 0.47 | Max 0.97
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