Motif IL_55178.2 Version IL_55178.2 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CF2_001 | 6CF2 | 0.3044 | 1 | Non canonical cWW and near pair | G | RNA (35-MER) | G | 5 | G | 6 | A | 7 | C | 8 | * | G | 27 | A | 28 | A | 30 | C | 31 | cWW | cWW | cWW | ||
| 2 | IL_4PMI_008 | 4PMI | 0.0000 | 1 | tWW and non-canonical cWW | A | Rev-Response-Element RNA | G | 46 | G | 47 | G | 48 | C | 49 | * | G | 70 | G | 71 | A | 73 | C | 74 | cWW | ntWW | cWW | tWW | cWW |
| 3 | IL_5J7L_296 | 5J7L | 0.2468 | 1 | Tandem non-canonical cWW pairs | DA | LSU rRNA | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1557 | C | 1558 | G | 1560 | C | 1561 | cWW | cWW | tWW | cWW | |
| 4 | IL_6DLR_005 | 6DLR | 0.4403 | 1 | tWW and near cWH | A | Guanidine-I riboswitch | G | 77 | G | 78 | A | 79 | G | 80 | * | C | 92 | A | 93 | G | 95 | C | 96 | cWW | cBW | tWW | cWW | |
| 5 | IL_6MDZ_001 | 6MDZ | 0.7552 | 2 | E+C | RNA (23-mer) | U | 9 | U | 10 | C | 12 | C | 13 | * | G | 9 | A | 10 | A | 12 | A | 13 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAC*GAAAC | 1 |
| GGGC*GGUAC | 1 |
| GAAG*CCUGC | 1 |
| GGAG*CAGGC | 1 |
| UUUCC*GACAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*AAA | 1 |
| GG*GUA | 1 |
| AA*CUG | 1 |
| GA*AGG | 1 |
| UUC*ACA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tWW and non-canonical cWW (1)
- Tandem non-canonical cWW pairs (1)
- Non canonical cWW and near pair (1)
- tWW and near cWH (1)
- Basepair signature
- cWW-cWW-tWW-cWW
- Heat map statistics
- Min 0.25 | Avg 0.44 | Max 0.89
Coloring options: