Motif IL_56455.2 Version IL_56455.2 of this group appears in releases 3.48 to 3.53

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	break		10		11		12		13		14		15		16		17		18	1-18	2-17	3-16	4-15	6-13	7-12	8-11	9-10
1	IL_7A0S_106	7A0S	0.1588	0	Bacterial 5S Loop E	Y	5S rRNA	C	73	A	74	A	75	U	76	G	77	A	78	U	79	A	80	C	81	*	G	100	A	101	A	102	A	103	A	104	G	105	U	106	C	107	G	108	cWW	tSH	tHW	ncBW	cWB	tWH	tHS	cWW
2	IL_5FDV_115	5FDV	0.1098	0	Bacterial 5S Loop E	1B	5S rRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	C	79	*	G	98	G	99	A	100	G	101	A	102	G	103	U	104	A	105	G	106	cWW	tSH	tHW	ncBW	cWB	tWH	tHS	cWW
3	IL_5J7L_359	5J7L	0.0000	0	Bacterial 5S Loop E	DB	5S rRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
4	IL_1DFU_001	1DFU	0.1110	0	Bacterial 5S Loop E	N+M	5S RRNA	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	*	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	cWW	tSH	tHW	cBW	cWB	tWH	tHS	cWW
5	IL_1FEU_001	1FEU	0.1906	0	Bacterial 5S Loop E	C+B	21 NT FRAGMENT OF 5S RRNA	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	cWW	tSH	tHW	cBW	ncWB	tWH	tHS	cWW
6	IL_364D_003	364D	0.2166	0	Bacterial 5S Loop E	C+B	RNA (31-mer)	C	97	G	98	A	99	G	100	A	101	G	102	U	103	A	104	G	105	*	C	71	G	72	A	73	U	74	G	75	G	76	U	77	A	78	G	79	cWW	tSH	ntHW	cBW	ntWH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAUGGUAG*CGAGAGUAG	2
CGAGAGUAG*CGAUGGUAG	2
CAAUGAUAC*GAAAAGUCG	1
CGAUGGUAC*GGAGAGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUGGUA*GAGAGUA	3
GAGAGUA*GAUGGUA	2
AAUGAUA*AAAAGUC	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Bacterial 5S Loop E (6)
Basepair signature: cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
Heat map statistics: Min 0.11 | Avg 0.15 | Max 0.24

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.141 s