Motif IL_56765.1 Version IL_56765.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-3 | 2-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_013 | 1FJG | 0.0000 | 0 | C-loop (H) | A | SSU rRNA | G | 292 | G | 293 | * | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | cWW | cWW | ntSH |
| 2 | IL_2QBZ_001 | 2QBZ | 0.6804 | 1 | X | M-Box RNA, ykoK riboswitch aptamer | C | 21 | G | 22 | * | C | 163 | G | 164 | A | 165 | U | 167 | G | 168 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*UGGCC | 1 |
| CG*CGAUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GGC | 1 |
| *GAUU | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_56765.1 | Only in the parent motif |
|---|---|---|---|
| IL_14789.1 Compare | IL_2QBZ_001 | IL_1FJG_013 | |
| IL_45778.1 Compare | IL_1FJG_013 | IL_2QBZ_001 | IL_3F1H_049, IL_2ZJR_047, IL_1S72_051 |
Children motifs
| Child motif | Common motif instances | Only in IL_56765.1 | Only in the child motif |
|---|---|---|---|
| IL_98421.1 Compare | IL_1FJG_013 | IL_2QBZ_001 | IL_2AW7_016, IL_3U5H_123 |
| IL_25739.1 Compare | IL_2QBZ_001 | IL_1FJG_013 |
- Annotations
-
- C-loop (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.68 | Avg 0.34 | Max 0.68
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