Motif IL_45778.1 Version IL_45778.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 1-4 | 1-7 | 2-3 | 2-5 | 2-6 | 4-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_013 | 1FJG | 0.0000 | 0 | C-loop (H) | A | SSU rRNA | G | 292 | G | 293 | * | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | cWW | cWW | ntSH | |||
| 2 | IL_2ZJR_047 | 2ZJR | 0.8908 | 1 | C-loop (H) | X | LSU rRNA | C | 1344 | C | 1346 | * | G | 1332 | G | 1333 | A | 1334 | A | 1335 | G | 1336 | cWW | cWW | ncSW | |||
| 3 | IL_1S72_051 | 1S72 | 0.8678 | 1 | C-loop (H) | 0 | LSU rRNA | A | 1437 | C | 1439 | * | G | 1425 | C | 1426 | A | 1427 | C | 1428 | U | 1429 | tHW | cWW | cWW | cSW | cSH | |
| 4 | IL_3F1H_049 | 3F1H | 0.9236 | 1 | A | 23S RRNA | A | 1331 | C | 1333 | * | G | 1319 | C | 1320 | A | 1321 | A | 1322 | U | 1323 | tHW | cWW | cWW | cSW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*UGGCC | 1 |
| CGC*GGAAG | 1 |
| AGC*GCACU | 1 |
| AGC*GCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GGC | 1 |
| G*GAA | 1 |
| G*CAC | 1 |
| G*CAA | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_45778.1 | Only in the parent motif |
|---|---|---|---|
| IL_47950.3 Compare | IL_3F1H_049, IL_2ZJR_047, IL_1FJG_013 | IL_1S72_051 | IL_1FJG_015, IL_2ZJR_096, IL_1FJG_047 |
| IL_53229.1 Compare | IL_1S72_051 | IL_3F1H_049, IL_2ZJR_047, IL_1FJG_013 | IL_1S72_091, IL_2QBZ_001, IL_3F1H_101 |
Children motifs
| Child motif | Common motif instances | Only in IL_45778.1 | Only in the child motif |
|---|---|---|---|
| IL_56765.1 Compare | IL_1FJG_013 | IL_3F1H_049, IL_2ZJR_047, IL_1S72_051 | IL_2QBZ_001 |
| IL_68930.1 Compare | IL_1S72_051 | IL_3F1H_049, IL_2ZJR_047, IL_1FJG_013 | IL_2XZM_022, IL_3PYO_047, IL_2QBG_033, IL_2QBG_102, IL_2ZJR_028, IL_2QBG_050, IL_3O58_079, IL_1S72_091, IL_1FJG_015, IL_2ZJR_096, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_002, IL_2AW7_018, IL_3O30_023, IL_1KOG_001 |
| IL_69835.1 Compare | IL_2ZJR_047 | IL_3F1H_049, IL_1FJG_013, IL_1S72_051 |
- Annotations
-
- C-loop (H) (3)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.17 | Avg 0.43 | Max 0.92
Coloring options: