Motif IL_58440.1 Version IL_58440.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-3 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_029 | 1S72 | 0.2332 | 0 | Major groove platform with extra cWW (H) | 0 | G | 830 | U | 831 | U | 832 | G | 833 | * | C | 849 | U | 850 | C | 851 | cWW | cSH | cWw | cWW |
| 2 | IL_1MMS_002 | 1MMS | 0.2296 | 1 | Major groove platform with extra cWW | C | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW |
| 3 | IL_2ZJR_018 | 2ZJR | 0.0000 | 0 | Major groove platform with extra cWW (H) | X | G | 751 | G | 752 | U | 753 | G | 754 | * | C | 769 | U | 770 | C | 771 | cWW | cSH | cWw | cWW |
| 4 | IL_3PYO_021 | 3PYO | 0.1103 | 0 | A | G | 738 | G | 739 | U | 740 | G | 741 | * | C | 756 | U | 757 | C | 758 | cWW | cSH | cWw | cWW | |
| 5 | IL_1MMS_004 | 1MMS | 0.1620 | 1 | D | G | 1087 | G | 1089 | U | 1090 | G | 1091 | * | C | 1100 | U | 1101 | C | 1102 | cWW | cSH | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUG*CUC | 2 |
| GGUG*CUC | 2 |
| GUUG*CUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGU*U | 2 |
| GU*U | 2 |
| UU*U | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_58440.1 | Only in the parent motif |
|---|---|---|---|
| IL_33923.2 Compare | IL_1MMS_002, IL_2ZJR_018, IL_1S72_029, IL_1MMS_004 | IL_3PYO_021 | IL_2ZJR_039, IL_3F1H_021, IL_1S72_003, IL_2QBZ_004, IL_3F1H_042, IL_2GDI_005, IL_2GDI_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_58440.1 | Only in the child motif |
|---|---|---|---|
| IL_55938.1 Compare | IL_1MMS_002, IL_2ZJR_018, IL_1S72_029, IL_1MMS_004 | IL_3PYO_021 | IL_4A1B_038, IL_1XJR_001, IL_2ZJR_039, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_3UXR_022, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_3UXR_092, IL_2XZM_014 |
- Annotations
-
- (2)
- Major groove platform with extra cWW (H) (2)
- Major groove platform with extra cWW (1)
- Basepair signature
- Heat map statistics
- Min 0.02 | Avg 0.15 | Max 0.29
Coloring options: