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Motif IL_59137.4 Version IL_59137.4 of this group appears in releases 3.20 to 3.24

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_4IOA_0244IOA0.37501Single bulged C (H)X LSU rRNAG938G940*C863C864cWWcWW
2 IL_5TBW_0375TBW0.42721Single bulged G1 LSU rRNAA983U985*A1099U1100cWWcWW
3 IL_3IGI_0043IGI0.39881Single bulged GAGroup IIC intronU82U84*A99A100cWWcWW
4 IL_5J7L_2715J7L0.33601Single bulged GDA LSU rRNAU913C915*G862A863cWWcWW
5 IL_1U9S_0061U9S0.53431Major groove intercalationARIBONUCLEASE PU158C160*G140G141ncWWcWW
6 IL_4IOA_1014IOA0.49861Single bulged GX LSU rRNAU2853C2855*G2813G2814cWWcWW
7 IL_3D0U_0053D0U0.46071Single bulged GALysine Riboswitch RNAU106G108*C81G82cWWncWW
8 IL_3DIL_0053DIL0.39461Single bulged GARNA (174-MER)U109C111*G84G85cWWcWW
9 IL_4V9F_0104V9F0.36951Single bulged G0 LSU rRNAU374C376*G274G275cWWcWW
10 IL_4LFB_0164LFB0.33711Single bulged GA SSU rRNAU387A389*U375G376cWWcWW
11 IL_5J7L_0195J7L0.27531Single bulged GAA SSU rRNAU387A389*U375G376cWWcWW
12 IL_4C7O_0044C7O0.25121Single bulged GESRP RNAU27U29*A15A16cWWcWW
13 IL_5J7L_0265J7L0.34505AA SSU rRNAC569G575*C880G881cWWcWW
14 IL_4LFB_0224LFB0.34985A SSU rRNAC569G575*C880G881cWWcWW
15 IL_6CZR_1346CZR0.284751a SSU rRNAC553G559*C858G859cWWcWW
16 IL_5DE8_0015DE80.28861Single bulged GAsc1C5G7*C30G31cWWcWW
17 IL_5DEA_0025DEA0.27391Single bulged GCsc1C5G7*C30G31cWWcWW
18 IL_3NDB_0043NDB0.20841Single bulged GM SRP RNAC239C241*G137G138ncWWcWW
19 IL_5J7L_0015J7L0.11151Single bulged GAA SSU rRNAU30A32*U552A553cWWcWW
20 IL_4LFB_0014LFB0.00001Single bulged GA SSU rRNAU30A32*U552A553cWWcWW
21 IL_6CZR_1136CZR0.15961Single bulged G1a SSU rRNAU31A33*U536A537cWWcWW
22 IL_2IZN_0012IZN0.22941Single bulged GRRNA (19-mer)C5||||P_1C7||||P_1*G14||||P_1G15||||P_1cWWcWW
23 IL_2IZN_0052IZN0.22941Single bulged GRRNA (19-mer)C5||||P_PC7||||P_P*G14||||P_PG15||||P_P
24 IL_4LFB_0364LFB0.33641Single bulged GA SSU rRNAU1390U1391*G925G927cWWcWW
25 IL_5J7L_0405J7L0.37511Single bulged GAA SSU rRNAU1390U1391*G925G927cWWcWW
26 IL_6CZR_1486CZR0.35771Single bulged G1a SSU rRNAU1373U1374*G903G905ncWWcWW
27 IL_4V88_4424V880.44101Single bulged GA6 SSU rRNAU1627U1628*G1149A1151cWWcWW
28 IL_4V9F_0264V9F0.46961Single bulged G0 LSU rRNAA793U794*A819U821cWWcWW
29 IL_4LVW_0024LVW0.50521Single bulged GATHF riboswitchG67U69*G17C18cWWcWW
30 IL_3SUX_0013SUX0.50721Single bulged GX THF riboswitchG76U78*G20C21cWWcWW
31 IL_3SUX_0043SUX0.50721Single bulged GX THF riboswitchG76||||17_555U78||||17_555*G20||||17_555C21||||17_555cWWcWW
32 IL_4Y4O_1974Y4O0.55871Single bulged G2A LSU rRNAG702U703*G728C730cWWcWW
33 IL_4IOA_0164IOA0.45951Single bulged GX LSU rRNAU715U716*G741A743cWWcWW
34 IL_5J7L_2625J7L0.43241Single bulged GDA LSU rRNAU702U703*G728A730cWWcWW
35 IL_4WF9_0234WF90.38791Single bulged GX LSU rRNAU747U748*G773A775cWWcWW
36 IL_5U30_0025U300.45121Single bulged GBsgRNAC3U4*A7G9cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGC*GG4
UU*GGA4
CGUAAAG*CG3
CGC*GG3
UGA*UA3
UU*GGG3
GGU*GC3
UGU*AA2
UGA*UG2
CGG*CG2
GCG*CC1
AGU*AU1
UGC*GA1
UGG*CG1
AU*AGU1
GU*GGC1
CU*AGG1
Non-Watson-Crick part of the motif
SequenceCounts
G*22
*G10
GUAAA*3
C*1

Release history

Release3.203.213.223.233.24
Date2019-06-282019-07-262019-08-232019-09-192019-10-16
StatusUpdated, 2 parentsExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single bulged G (31)
  • (3)
  • Major groove intercalation (1)
  • Single bulged C (H) (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.46 | Max 0.93
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