Motif IL_61616.1 Version IL_61616.1 of this group appears in releases 0.1 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-9 | 5-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1E7K_001 | 1E7K | 0.0000 | 1 | Kink-turn from U4 | C | RNA (22-mer) | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | ntsS | tSH | tHS | cWW |
| 2 | IL_1E7K_002 | 1E7K | 0.1601 | 1 | D | RNA (22-mer) | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | ntsS | tSH | tHS | cWW | |
| 3 | IL_2OZB_002 | 2OZB | 0.1720 | 1 | Kink-turn from U4 | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | tsS | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGAG*CGAG | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUGA*GA | 3 |
Release history
| Release | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 |
|---|---|---|---|---|---|
| Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_61616.1 | Only in the child motif |
|---|---|---|---|
| IL_68939.1 Compare | IL_2OZB_002, IL_1E7K_001, IL_1E7K_002 | IL_3SIV_005, IL_3SIV_004, IL_3SIV_003, IL_3SIV_001, IL_3SIU_001, IL_3SIU_002 |
- Annotations
-
- Kink-turn from U4 (2)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.15 | Avg 0.11 | Max 0.17
Coloring options: