Motif IL_68939.1 Version IL_68939.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-9 | 5-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3SIU_001 | 3SIU | 0.1601 | 1 | C | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW | |
| 2 | IL_1E7K_002 | 1E7K | 0.1474 | 1 | D | RNA (22-mer) | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | ntsS | tSH | tHS | cWW | |
| 3 | IL_2OZB_002 | 2OZB | 0.0000 | 1 | Kink-turn from U4 | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | tsS | tSH | tHS | cWW |
| 4 | IL_1E7K_001 | 1E7K | 0.1314 | 1 | Kink-turn from U4 | C | RNA (22-mer) | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | * | C | 42 | G | 43 | A | 44 | G | 45 | cWW | ntsS | tSH | tHS | cWW |
| 5 | IL_3SIV_001 | 3SIV | 0.2187 | 1 | Kink-turn from U4 | C+F | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW |
| 6 | IL_3SIU_002 | 3SIU | 0.2146 | 1 | Kink-turn from U4 | F | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW |
| 7 | IL_3SIV_003 | 3SIV | 0.2200 | 1 | Kink-turn from U4 | F+C | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | ncWW |
| 8 | IL_3SIV_005 | 3SIV | 0.2336 | 1 | L+I | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | ntsS | tSH | tHS | cWW | |
| 9 | IL_3SIV_004 | 3SIV | 0.2270 | 1 | I+L | U4atac snRNA | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | * | U | 47 | G | 48 | A | 49 | G | 50 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGAG*UGAG | 6 |
| CAAUGAG*CGAG | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUGA*GA | 9 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_68939.1 | Only in the parent motif |
|---|---|---|---|
| IL_61616.1 Compare | IL_2OZB_002, IL_1E7K_001, IL_1E7K_002 | IL_3SIV_005, IL_3SIV_004, IL_3SIV_003, IL_3SIV_001, IL_3SIU_001, IL_3SIU_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_68939.1 | Only in the child motif |
|---|---|---|---|
| IL_77263.1 Compare | IL_3SIU_001, IL_2OZB_002, IL_3SIV_003, IL_3SIV_001, IL_1E7K_002 | IL_3SIV_005, IL_3SIV_004, IL_3SIU_002, IL_1E7K_001 |
- Annotations
-
- Kink-turn from U4 (5)
- (4)
- Basepair signature
- 10_cWW-tSS--tSH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.17 | Max 0.33
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