#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-82-93-73-94-74-85-6
1 IL_1S72_0891S720.232340 LSU rRNAC2672U2673G2674A2675C2676*G2809G2810A2811A2813G2817cWWtWHtSHtHScWW
2 IL_3V2F_0983V2F0.00004A23S Ribosomal RNAU2636U2637G2638A2639G2640*C2774A2775A2776A2778G2782cWWtWHtSHtHScWW
3 IL_4IOA_0954IOA0.08324tSH-tHS-tHW (H)X LSU rRNAU2615U2616G2617A2618G2619*C2754A2755A2756A2758G2762cWWtWHntSHtHScWW
4 IL_4IOA_0694IOA0.90520UAA/GAN with extra pair (H)X LSU rRNAU1843C1844A1845A1846G1847*U1870G1871A1872A1873G1874ncWWntSHcWW
5 IL_3V2F_0713V2F0.82770A23S Ribosomal RNAU1851C1852A1853A1854G1855*C1887G1888A1889A1890G1891cWWtSHtHScWW
6 IL_4IOA_0504IOA0.94850UAA/GAN (H)X LSU rRNAC1389G1390A1391U1392G1393*C1364U1365A1366A1367G1368cWWtSHtHWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUGAG*CAAGAUGAG2
CUGAC*GGAAAAGAG1
UCAAG*UGAAG1
UCAAG*CGAAG1
CGAUG*CUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
UGA*AAGAUGA2
CAA*GAA2
UGA*GAAAAGA1
GAU*UAA1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.13
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_39585.1Only in the parent motif
IL_38960.1
Compare
IL_3V2F_098, IL_1S72_089, IL_3V2F_071IL_4IOA_069, IL_4IOA_050, IL_4IOA_095IL_2ZJR_070, IL_2ZJR_048, IL_2ZJR_094

Children motifs

Child motifCommon motif instancesOnly in IL_39585.1Only in the child motif
IL_64847.1
Compare
IL_1S72_089, IL_4IOA_069, IL_4IOA_050, IL_4IOA_095IL_3V2F_098, IL_3V2F_071IL_1VW3_040, IL_4NVV_098, IL_4NVV_074
Annotations
  • (3)
  • UAA/GAN (H) (1)
  • UAA/GAN with extra pair (H) (1)
  • tSH-tHS-tHW (H) (1)
  • Basepair signature
    cWW-tSH-tWH-tSH-tHS-cWW
    Heat map statistics
    Min 0.08 | Avg 0.58 | Max 0.96
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