Motif IL_39585.1 Version IL_39585.1 of this group appears in releases 1.1 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-7 | 3-9 | 4-7 | 4-8 | 5-6 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_089 | 1S72 | 0.2323 | 4 | 0 | LSU rRNA | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | * | G | 2809 | G | 2810 | A | 2811 | A | 2813 | G | 2817 | cWW | tWH | tSH | tHS | cWW | ||||
2 | IL_3V2F_098 | 3V2F | 0.0000 | 4 | A | 23S Ribosomal RNA | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | * | C | 2774 | A | 2775 | A | 2776 | A | 2778 | G | 2782 | cWW | tWH | tSH | tHS | cWW | ||||
3 | IL_4IOA_095 | 4IOA | 0.0832 | 4 | tSH-tHS-tHW (H) | X | LSU rRNA | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | * | C | 2754 | A | 2755 | A | 2756 | A | 2758 | G | 2762 | cWW | tWH | ntSH | tHS | cWW | |||
4 | IL_4IOA_069 | 4IOA | 0.9052 | 0 | UAA/GAN with extra pair (H) | X | LSU rRNA | U | 1843 | C | 1844 | A | 1845 | A | 1846 | G | 1847 | * | U | 1870 | G | 1871 | A | 1872 | A | 1873 | G | 1874 | ncWW | ntSH | cWW | |||||
5 | IL_3V2F_071 | 3V2F | 0.8277 | 0 | A | 23S Ribosomal RNA | U | 1851 | C | 1852 | A | 1853 | A | 1854 | G | 1855 | * | C | 1887 | G | 1888 | A | 1889 | A | 1890 | G | 1891 | cWW | tSH | tHS | cWW | |||||
6 | IL_4IOA_050 | 4IOA | 0.9485 | 0 | UAA/GAN (H) | X | LSU rRNA | C | 1389 | G | 1390 | A | 1391 | U | 1392 | G | 1393 | * | C | 1364 | U | 1365 | A | 1366 | A | 1367 | G | 1368 | cWW | tSH | tHW | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UUGAG*CAAGAUGAG | 2 |
CUGAC*GGAAAAGAG | 1 |
UCAAG*UGAAG | 1 |
UCAAG*CGAAG | 1 |
CGAUG*CUAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGA*AAGAUGA | 2 |
CAA*GAA | 2 |
UGA*GAAAAGA | 1 |
GAU*UAA | 1 |
Release history
Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_39585.1 | Only in the parent motif |
---|---|---|---|
IL_38960.1 Compare | IL_3V2F_098, IL_1S72_089, IL_3V2F_071 | IL_4IOA_069, IL_4IOA_050, IL_4IOA_095 | IL_2ZJR_070, IL_2ZJR_048, IL_2ZJR_094 |
Children motifs
Child motif | Common motif instances | Only in IL_39585.1 | Only in the child motif |
---|---|---|---|
IL_64847.1 Compare | IL_1S72_089, IL_4IOA_069, IL_4IOA_050, IL_4IOA_095 | IL_3V2F_098, IL_3V2F_071 | IL_1VW3_040, IL_4NVV_098, IL_4NVV_074 |
- Annotations
-
- (3)
- UAA/GAN (H) (1)
- UAA/GAN with extra pair (H) (1)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- cWW-tSH-tWH-tSH-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.58 | Max 0.96
Coloring options: