Motif IL_64879.2 Version IL_64879.2 of this group appears in releases 3.80 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 2-11 | 3-9 | 4-8 | 5-8 | 6-7 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5J7L_063 | 5J7L | 0.3179 | 0 | Triple sheared related | AA | SSU rRNA | A | 1430 | A | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | C | 1467 | A | 1468 | C | 1469 | U | 1470 | cWW | tSH | tSH | ntHS | cWW | ||
2 | IL_4V9F_018 | 4V9F | 0.0000 | 0 | Triple sheared related | 0 | LSU rRNA | A | 562 | C | 563 | G | 564 | A | 565 | A | 566 | U | 567 | * | A | 591 | G | 592 | A | 593 | C | 594 | U | 595 | cWW | cWB | ntSH | tHS | cWW | ||
3 | IL_8C3A_104 | 8C3A | 0.9025 | 9 | Other IL | 1 | LSU rRNA | G | 2429 | G | 2430 | A | 2440 | G | 2441 | U | 2442 | G | 2443 | * | C | 2470 | U | 2471 | A | 2472 | C | 2473 | C | 2474 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AAGAAG*CCACU | 1 |
ACGAAU*AGACU | 1 |
GGUGUAGAAUAAGUG*CUACC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AGAA*CAC | 1 |
CGAA*GAC | 1 |
GUGUAGAAUAAGU*UAC | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple sheared related (2)
- Other IL (1)
- Basepair signature
- cWW-L-R-tSH-L-R-L-cWW
- Heat map statistics
- Min 0.32 | Avg 0.47 | Max 0.90
Coloring options: