#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-53-4
1 IL_5TBW_0815TBW0.41520Single stack bend1 LSU rRNAC1951G1952G1953*C2094G2095cWWcWW
2 IL_5J7L_0445J7L0.25160Single stack bendAA SSU rRNAG1041A1042G1043*C998C999cWWcWW
3 IL_8C3A_0918C3A0.258201 LSU rRNAC2182U2183G2184*C2215G2216cWWcWW
4 IL_5J7L_2695J7L0.25930Single stack bendDA LSU rRNAG926A927A928*U850C851cWWcWW
5 IL_4V9F_0814V9F0.19750Single stack bend0 LSU rRNAU2436A2437G2438*C2454A2455cWWcWW
6 IL_7A0S_0547A0S0.17990Single stack bendX LSU rRNAA1463A1464G1465*C1477U1478cWWcWW
7 IL_5J7L_0325J7L0.00000Single stack bendAA SSU rRNAA746A747G748*C658U659cWWcWW
8 IL_8C3A_1108C3A0.19651Single stack bend with bulge (H)1 LSU rRNAG2742U2743C2745*G2759C2760cWWcWW
9 IL_8C3A_0128C3A0.232801 LSU rRNAA236U237G238*C177U178cWWcWW
10 IL_4C7O_0024C7O0.29840Single stack bendESRP RNAA36U37G38*C8U9cWWcWW
11 IL_8C3A_0768C3A0.25900Single stack bend (H)1 LSU rRNAG1772U1773G1774*C1666C1667cWWcWW
12 IL_5TBW_0705TBW0.28080Single stack bend1 LSU rRNAG1776U1777G1778*C1670C1671cWWcWW
13 IL_7KGA_0037KGA0.25310Single stack bendAFlavivirus DB elementA37C38U39*A15U16cWWcWW
14 IL_8C3A_1468C3A0.216903 5S rRNAC47C48G49*C29G30cWWcWW
15 IL_5TBW_3755TBW0.22950Single stack bendAS 5S rRNAC47U48G49*C29G30cWWcWW
16 IL_5TBW_0095TBW0.24180Single stack bend1 LSU rRNAC163A164A165*U257G258cWWcWW
17 IL_4LFB_0414LFB0.26430Single stack bendA SSU rRNAG1002G1003G1003|||A*C1038C1039cWWcWW
18 IL_4V83_2364V830.40120Single stack bendCVdomain 3 of PSIC IGR IRES RNAC6155A6156A6157*U6172G6173cWWcWW
19 IL_5TBW_1015TBW0.27611Single stack bend with bulge1 LSU rRNAG2770U2771C2773*G2787C2788cWWcWW
20 IL_4UYK_0024UYK0.42600Not an internal loopRSRP RNAG78C79G80*C121C122ncwWcWW
21 IL_4V84_4204V840.43720AVRNA (34-MER)C6181A6182G6183*C6194G6195ncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUG*CG2
AAG*CU2
GUCC*GC2
AUG*CU2
GUG*CC2
CAA*UG2
CGG*CG1
GAG*CC1
GAA*UC1
UAG*CA1
ACU*AU1
CCG*CG1
GGG*CC1
GCG*CC1
CAG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
A*8
U*6
C*3
G*2
UC*2

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single stack bend (13)
  • (4)
  • Not an internal loop (1)
  • Single stack bend with bulge (1)
  • Single stack bend (H) (1)
  • Single stack bend with bulge (H) (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.33 | Max 0.64
    Help

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