Motif IL_67809.1 Version IL_67809.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_5TBW_081 | 5TBW | 0.4152 | 0 | Single stack bend | 1 | LSU rRNA | C | 1951 | G | 1952 | G | 1953 | * | C | 2094 | G | 2095 | cWW | cWW | |
2 | IL_5J7L_044 | 5J7L | 0.2516 | 0 | Single stack bend | AA | SSU rRNA | G | 1041 | A | 1042 | G | 1043 | * | C | 998 | C | 999 | cWW | cWW | |
3 | IL_8C3A_091 | 8C3A | 0.2582 | 0 | 1 | LSU rRNA | C | 2182 | U | 2183 | G | 2184 | * | C | 2215 | G | 2216 | cWW | cWW | ||
4 | IL_5J7L_269 | 5J7L | 0.2593 | 0 | Single stack bend | DA | LSU rRNA | G | 926 | A | 927 | A | 928 | * | U | 850 | C | 851 | cWW | cWW | |
5 | IL_4V9F_081 | 4V9F | 0.1975 | 0 | Single stack bend | 0 | LSU rRNA | U | 2436 | A | 2437 | G | 2438 | * | C | 2454 | A | 2455 | cWW | cWW | |
6 | IL_7A0S_054 | 7A0S | 0.1799 | 0 | Single stack bend | X | LSU rRNA | A | 1463 | A | 1464 | G | 1465 | * | C | 1477 | U | 1478 | cWW | cWW | |
7 | IL_5J7L_032 | 5J7L | 0.0000 | 0 | Single stack bend | AA | SSU rRNA | A | 746 | A | 747 | G | 748 | * | C | 658 | U | 659 | cWW | cWW | |
8 | IL_8C3A_110 | 8C3A | 0.1965 | 1 | Single stack bend with bulge (H) | 1 | LSU rRNA | G | 2742 | U | 2743 | C | 2745 | * | G | 2759 | C | 2760 | cWW | cWW | |
9 | IL_8C3A_012 | 8C3A | 0.2328 | 0 | 1 | LSU rRNA | A | 236 | U | 237 | G | 238 | * | C | 177 | U | 178 | cWW | cWW | ||
10 | IL_4C7O_002 | 4C7O | 0.2984 | 0 | Single stack bend | E | SRP RNA | A | 36 | U | 37 | G | 38 | * | C | 8 | U | 9 | cWW | cWW | |
11 | IL_8C3A_076 | 8C3A | 0.2590 | 0 | Single stack bend (H) | 1 | LSU rRNA | G | 1772 | U | 1773 | G | 1774 | * | C | 1666 | C | 1667 | cWW | cWW | |
12 | IL_5TBW_070 | 5TBW | 0.2808 | 0 | Single stack bend | 1 | LSU rRNA | G | 1776 | U | 1777 | G | 1778 | * | C | 1670 | C | 1671 | cWW | cWW | |
13 | IL_7KGA_003 | 7KGA | 0.2531 | 0 | Single stack bend | A | Flavivirus DB element | A | 37 | C | 38 | U | 39 | * | A | 15 | U | 16 | cWW | cWW | |
14 | IL_8C3A_146 | 8C3A | 0.2169 | 0 | 3 | 5S rRNA | C | 47 | C | 48 | G | 49 | * | C | 29 | G | 30 | cWW | cWW | ||
15 | IL_5TBW_375 | 5TBW | 0.2295 | 0 | Single stack bend | AS | 5S rRNA | C | 47 | U | 48 | G | 49 | * | C | 29 | G | 30 | cWW | cWW | |
16 | IL_5TBW_009 | 5TBW | 0.2418 | 0 | Single stack bend | 1 | LSU rRNA | C | 163 | A | 164 | A | 165 | * | U | 257 | G | 258 | cWW | cWW | |
17 | IL_4LFB_041 | 4LFB | 0.2643 | 0 | Single stack bend | A | SSU rRNA | G | 1002 | G | 1003 | G | 1003|||A | * | C | 1038 | C | 1039 | cWW | cWW | |
18 | IL_4V83_236 | 4V83 | 0.4012 | 0 | Single stack bend | CV | domain 3 of PSIC IGR IRES RNA | C | 6155 | A | 6156 | A | 6157 | * | U | 6172 | G | 6173 | cWW | cWW | |
19 | IL_5TBW_101 | 5TBW | 0.2761 | 1 | Single stack bend with bulge | 1 | LSU rRNA | G | 2770 | U | 2771 | C | 2773 | * | G | 2787 | C | 2788 | cWW | cWW | |
20 | IL_4UYK_002 | 4UYK | 0.4260 | 0 | Not an internal loop | R | SRP RNA | G | 78 | C | 79 | G | 80 | * | C | 121 | C | 122 | ncwW | cWW | |
21 | IL_4V84_420 | 4V84 | 0.4372 | 0 | AV | RNA (34-MER) | C | 6181 | A | 6182 | G | 6183 | * | C | 6194 | G | 6195 | ncWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUG*CG | 2 |
AAG*CU | 2 |
GUCC*GC | 2 |
AUG*CU | 2 |
GUG*CC | 2 |
CAA*UG | 2 |
CGG*CG | 1 |
GAG*CC | 1 |
GAA*UC | 1 |
UAG*CA | 1 |
ACU*AU | 1 |
CCG*CG | 1 |
GGG*CC | 1 |
GCG*CC | 1 |
CAG*CG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A* | 8 |
U* | 6 |
C* | 3 |
G* | 2 |
UC* | 2 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single stack bend (13)
- (4)
- Not an internal loop (1)
- Single stack bend with bulge (1)
- Single stack bend (H) (1)
- Single stack bend with bulge (H) (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.09 | Avg 0.33 | Max 0.64
Coloring options: