Motif IL_67809.1 Version IL_67809.1 of this group appears in releases 3.88 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	2-5	3-4
1	IL_5TBW_081	5TBW	0.4152	0	Single stack bend	1	LSU rRNA	C	1951	G	1952	G	1953	*	C	2094	G	2095	cWW		cWW
2	IL_5J7L_044	5J7L	0.2516	0	Single stack bend	AA	SSU rRNA	G	1041	A	1042	G	1043	*	C	998	C	999	cWW		cWW
3	IL_8C3A_091	8C3A	0.2582	0	Single stack bend	1	LSU rRNA	C	2182	U	2183	G	2184	*	C	2215	G	2216	cWW		cWW
4	IL_5J7L_269	5J7L	0.2593	0	Single stack bend	DA	LSU rRNA	G	926	A	927	A	928	*	U	850	C	851	cWW		cWW
5	IL_4V9F_081	4V9F	0.1975	0	Single stack bend	0	LSU rRNA	U	2436	A	2437	G	2438	*	C	2454	A	2455	cWW		cWW
6	IL_7A0S_054	7A0S	0.1799	0	Single stack bend	X	LSU rRNA	A	1463	A	1464	G	1465	*	C	1477	U	1478	cWW		cWW
7	IL_5J7L_032	5J7L	0.0000	0	Single stack bend	AA	SSU rRNA	A	746	A	747	G	748	*	C	658	U	659	cWW		cWW
8	IL_8C3A_110	8C3A	0.1965	1	Single stack bend	1	LSU rRNA	G	2742	U	2743	C	2745	*	G	2759	C	2760	cWW		cWW
9	IL_8C3A_012	8C3A	0.2328	0	Single stack bend	1	LSU rRNA	A	236	U	237	G	238	*	C	177	U	178	cWW		cWW
10	IL_4C7O_002	4C7O	0.2984	0	Single stack bend	E	SRP RNA	A	36	U	37	G	38	*	C	8	U	9	cWW		cWW
11	IL_8C3A_076	8C3A	0.2590	0	Single stack bend	1	LSU rRNA	G	1772	U	1773	G	1774	*	C	1666	C	1667	cWW		cWW
12	IL_5TBW_070	5TBW	0.2808	0	Single stack bend	1	LSU rRNA	G	1776	U	1777	G	1778	*	C	1670	C	1671	cWW		cWW
13	IL_7KGA_003	7KGA	0.2531	0	Single stack bend	A	Flavivirus DB element	A	37	C	38	U	39	*	A	15	U	16	cWW		cWW
14	IL_8C3A_146	8C3A	0.2169	0	Single stack bend	3	5S rRNA	C	47	C	48	G	49	*	C	29	G	30	cWW		cWW
15	IL_5TBW_375	5TBW	0.2295	0	Single stack bend	AS	5S rRNA	C	47	U	48	G	49	*	C	29	G	30	cWW		cWW
16	IL_5TBW_009	5TBW	0.2418	0	Single stack bend	1	LSU rRNA	C	163	A	164	A	165	*	U	257	G	258	cWW		cWW
17	IL_4LFB_041	4LFB	0.2643	0	Single stack bend	A	SSU rRNA	G	1002	G	1003	G	1003\|\|\|A	*	C	1038	C	1039	cWW		cWW
18	IL_4V83_236	4V83	0.4012	0	Single stack bend	CV	domain 3 of PSIC IGR IRES RNA	C	6155	A	6156	A	6157	*	U	6172	G	6173	cWW		cWW
19	IL_5TBW_101	5TBW	0.2761	1	Single stack bend	1	LSU rRNA	G	2770	U	2771	C	2773	*	G	2787	C	2788	cWW		cWW
20	IL_4UYK_002	4UYK	0.4260	0	Not an internal loop	R	SRP RNA	G	78	C	79	G	80	*	C	121	C	122		ncwW	cWW
21	IL_4V84_420	4V84	0.4372	0	Single stack bend	AV	RNA (34-MER)	C	6181	A	6182	G	6183	*	C	6194	G	6195	ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUG*CG	2
AAG*CU	2
GUCC*GC	2
AUG*CU	2
GUG*CC	2
CAA*UG	2
CGG*CG	1
GAG*CC	1
GAA*UC	1
UAG*CA	1
ACU*AU	1
CCG*CG	1
GGG*CC	1
GCG*CC	1
CAG*CG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	8
U*	6
C*	3
G*	2
UC*	2

Release history

Release	3.88
Date	2024-09-11
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single stack bend (20)
Not an internal loop (1)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.09 | Avg 0.33 | Max 0.64

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