IL_67828.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4		5	1-4	1-5	2-3
1	IL_4W21_036	4W21	0.4137	0		5	LSU rRNA	G	927	C	928	*	G	735	C	736	C	737		cWW	cWW
2	IL_4A1B_069	4A1B	0.4614	0		1	LSU rRNA	G	1849	C	1850	*	G	1643	A	1644	C	1645		cWW	cWW
3	IL_3U5H_078	3U5H	0.3522	0		5	LSU rRNA	C	1670	C	1671	*	G	1776	U	1777	G	1778		cWW	cWW
4	IL_4CUV_077	4CUV	0.3936	0		1	LSU rRNA	C	1670	C	1671	*	G	1776	U	1777	G	1778		cWW	cWW
5	IL_4C7O_002	4C7O	0.4911	0	Single stack bend	E	SRP RNA	C	8	U	9	*	A	36	U	37	G	38		cWW	cWW
6	IL_4W21_144	4W21	0.4848	0		5	LSU rRNA	G	4472	A	4473	*	U	4481	U	4482	C	4483		cWW	cWW
7	IL_4A1B_073	4A1B	0.3359	0		1	LSU rRNA	C	1694	A	1695	*	U	1802	U	1803	G	1804		cWW	cWW
8	IL_3J7A_082	3J7A	0.2578	0		A	SSU rRNA	A	1983	A	1984	*	U	2005	U	2006	U	2007		cWW	cWW
9	IL_4W23_014	4W23	0.3275	0		2	SSU rRNA	A	301	A	302	*	U	218	U	219	U	220		ncWW	cWW
10	IL_4W23_085	4W23	0.3286	0		2	SSU rRNA	G	1858	A	1859	*	U	1839	U	1840	C	1841		cWW	cWW
11	IL_4W21_095	4W21	0.3150	0		5	LSU rRNA	C	2499	U	2500	*	A	2477	C	2478	G	2479		cWW	cWW
12	IL_1VW3_093	1VW3	0.3143	0		A	LSU rRNA	U	3161	U	3162	*	A	3242	A	3243	A	3244		ncWW	ncWW
13	IL_4W21_062	4W21	0.3496	0		5	LSU rRNA	G	1681	A	1682	*	U	1672	U	1673	C	1674		cWW	ncWW
14	IL_2AW7_025	2AW7	0.5157	0		A	SSU rRNA	U	458	A	459	*	U	472	U	473	G	474		cWW	cWW
15	IL_4A1B_018	4A1B	0.4653	0		1	LSU rRNA	U	511	G	512	*	U	466	A	467	A	468		cWW	cWW
16	IL_1VW3_058	1VW3	0.4995	0		A	LSU rRNA	U	1785	A	1786	*	U	1764	A	1765	A	1766		cWW	cWW
17	IL_3U5H_037	3U5H	0.4008	0		5	LSU rRNA	C	969	A	970	*	U	1111	A	1112	G	1113		cWW	cWW
18	IL_4A1B_042	4A1B	0.3736	0		1	LSU rRNA	C	994	A	995	*	U	1138	A	1139	G	1140		cWW	cWW
19	IL_1VX6_042	1VX6	0.2338	0		A	LSU rRNA	C	1088	U	1089	*	A	1239	A	1240	G	1241		cWW	cWW
20	IL_1S72_005	1S72	0.1675	0	Single stack bend (H)	0	LSU rRNA	C	153	C	154	*	G	182	A	183	G	184		cWW	cWW
21	IL_2QBG_090	2QBG	0.3047	0		B	LSU rRNA	A	2453	G	2454	*	C	2498	C	2499	U	2500		cWW	cWW
22	IL_4QCN_088	4QCN	0.4205	0		A	LSU rRNA	A	2465	G	2466	*	C	2510	C	2511	U	2512		cWW	cWW
23	IL_4IOA_085	4IOA	0.3885	0		X	LSU rRNA	A	2432	G	2433	*	C	2477	C	2478	U	2479		cWW	cWW
24	IL_2AW7_024	2AW7	0.4091	0		A	SSU rRNA	G	454	G	455	*	C	477	A	478	U	479		cWW	cWW
25	IL_4CUV_088	4CUV	0.3525	0		1	LSU rRNA	C	2094	G	2095	*	C	1951	G	1952	G	1953		ncWW	ncWW
26	IL_1VW3_010	1VW3	0.0000	0		A	LSU rRNA	C	223	U	224	*	A	252	A	253	G	254		cWW	cWW
27	IL_1S72_079	1S72	0.1756	0	Single stack bend (H)	0	LSU rRNA	C	2454	A	2455	*	U	2436	A	2437	G	2438		cWW	cWW
28	IL_4IOA_056	4IOA	0.2202	0	Single stack bend (H)	X	LSU rRNA	C	1477	U	1478	*	A	1463	A	1464	G	1465	ncWW	cWW	cWW
29	IL_2AW7_047	2AW7	0.2514	0		A	SSU rRNA	C	998	C	999	*	G	1041	A	1042	G	1043		cWW	cWW
30	IL_2QBG_029	2QBG	0.3285	0		B	LSU rRNA	U	850	C	851	*	G	926	A	927	A	928		cWW	cWW
31	IL_4GMA_001	4GMA	0.3708	0		Z	Cobalamin riboswitch	G	176	U	177	*	A	7	G	8	C	9		cWW	ncWW
32	IL_4W23_020	4W23	0.2512	0		2	SSU rRNA	U	423	C	424	*	G	413	A	414	A	415		cWW	cWW
33	IL_4W23_027	4W23	0.2954	0		2	SSU rRNA	U	596	G	597	*	C	639	A	640	A	641		cWW	cWW
34	IL_1VW3_030	1VW3	0.2692	0		A	LSU rRNA	G	817	U	818	*	A	807	A	808	C	809	ncWW	cWW	cWW
35	IL_4W21_009	4W21	0.3016	0		5	LSU rRNA	G	160	G	161	*	C	274	C	275	C	276		cWW	ncWW
36	IL_1FJG_046	1FJG	0.4315	0		A	SSU rRNA	G	1127	C	1128	*	G	1143	G	1144	C	1145		ncWW	cWW
37	IL_2QBG_027	2QBG	0.3439	0		B	LSU rRNA	C	837	C	838	*	G	940	A	941	G	942		cWW	cWW
38	IL_4IOA_021	4IOA	0.3260	0	Single stack bend (H)	X	LSU rRNA	C	850	C	851	*	G	951	A	952	G	953		cWW	cWW
39	IL_4QCN_024	4QCN	0.3028	0		A	LSU rRNA	C	884	C	885	*	G	985	A	986	G	987		cWW	cWW
40	IL_1VX6_002	1VX6	0.2254	0		A	LSU rRNA	U	27	C	28	*	G	56	A	57	A	58		cWW	cWW
41	IL_4CUV_004	4CUV	0.1988	0		1	LSU rRNA	C	27	C	28	*	G	56	A	57	G	58		cWW	cWW
42	IL_3U5H_004	3U5H	0.2278	0		5	LSU rRNA	C	27	C	28	*	G	56	A	57	G	58		cWW	cWW
43	IL_4A1B_001	4A1B	0.2231	0		1	LSU rRNA	C	25	C	26	*	G	54	A	55	G	56		cWW	cWW
44	IL_4IOA_005	4IOA	0.1681	0	Single stack bend (H)	X	LSU rRNA	C	160	U	161	*	A	189	A	190	G	191		cWW	cWW
45	IL_4QCN_005	4QCN	0.1987	0		A	LSU rRNA	C	172	C	173	*	G	201	A	202	G	203		cWW	cWW
46	IL_2QBG_010	2QBG	0.1764	0		B	LSU rRNA	C	183	C	184	*	G	212	A	213	G	214		cWW	cWW
47	IL_3U5H_146	3U5H	0.2852	0		7	5S rRNA	C	29	G	30	*	C	47	U	48	G	49		cWW	cWW
48	IL_4CUV_153	4CUV	0.2745	0		3	5S rRNA	C	29	G	30	*	C	47	U	48	G	49		cWW	cWW
49	IL_4CUV_010	4CUV	0.3831	0		1	LSU rRNA	U	257	G	258	*	C	163	A	164	A	165		cWW	cWW
50	IL_3U5H_009	3U5H	0.3761	0		5	LSU rRNA	U	257	G	258	*	C	163	A	164	A	165		cWW	cWW
51	IL_4W21_045	4W21	0.4148	0		5	LSU rRNA	C	1097	G	1098	*	C	1197	G	1198	G	1199	ncWW		cWW
52	IL_2QWY_002	2QWY	0.6238	0		A	SAM-II riboswitch	U	21	G	22	*	C	43	U	44	A	45		cWW	cWW
53	IL_2QWY_005	2QWY	0.7085	0		B	SAM-II riboswitch	U	21	G	22	*	C	43	U	44	A	45		cWW	cWW
54	IL_4M30_001	4M30	0.4275	0		C+D	RNA12	U	28	A	2	*	U	25	U	26	A	27		cWW	cWW
55	IL_1O9M_001	1O9M	0.4299	1		A+B	EUBACTERIAL A-SITE	G	1405	C	1407	*	G	1494	U	1495	C	1496		cWW	cWW
56	IL_2O3X_001	2O3X	0.3918	1	Stack and bulge	A+B	RNA (23-mer)	G	5	C	7	*	G	42	U	43	C	44		cWW	cWW
57	IL_4IOA_046	4IOA	0.5120	1	Intercalated cWW (H)	X	LSU rRNA	U	1232	C	1234	*	G	1241	A	1242	G	1243		cWW	cWW
58	IL_2QBG_084	2QBG	0.5635	1		B	LSU rRNA	C	2103	U	2105	*	A	2184	U	2185	G	2186		cWW	cWW
59	IL_2O3X_003	2O3X	0.6055	2	Decoding loop related	A+B	RNA (23-mer)	G	16	G	19	*	C	30	A	31	C	32		cWW	cWW
60	IL_1ZX7_007	1ZX7	0.6008	2		G+H	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
61	IL_1ZX7_001	1ZX7	0.5559	2		A+B	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
62	IL_1T0E_001	1T0E	0.6922	2	Decoding loop related	A+C	RNA (18-mer) + RNA (17-mer)	G	7	G	10\|\|A	*	C	16	A	17	C	18		cWW	cWW
63	IL_3T4B_001	3T4B	0.5618	1		A	HCV IRES pseudoknot domain plus crystallization module	G	135	G	137	*	U	287	A	288	C	289		cWW	cWW
64	IL_4A1B_009	4A1B	0.5857	0		1	LSU rRNA	U	245	G	246	*	U	173	A	174	A	175		ncWW	cWW
65	IL_3MOJ_004	3MOJ	0.6333	0	Single stack bend	A	LSU rRNA	U	2522	G	2523	*	C	2540	A	2541	A	2542		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAG	10
CU*AAG	4
UG*CAA	4
GA*UUC	3
CA*UAG	3
AG*CCU	3
UC*GAA	3
GAAG*CAC	3
CC*GUG	2
AA*UUU	2
UG*UAA	2
CG*CUG	2
UG*CUA	2
GUC*GUC	2
GC*GCC	1
GC*GAC	1
CU*AUG	1
CA*UUG	1
CU*ACG	1
UU*AAA	1
UA*UUG	1
UA*UAA	1
GG*CAU	1
CGG*CG	1
GU*AGC	1
GU*AAC	1
GG*CCC	1
GC*GGC	1
CG*CGG	1
UA*UUA	1
UAC*GAG	1
CCU*AUG	1
CAC*GAAG	1
GAG*UAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	31
*U	15
*C	6
*G	3
AA*A	3
U*U	2
A*A	2
G*	1
C*U	1
A*AA	1

Release history

Release	1.18
Date	2014-10-07
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_67828.2	Only in the parent motif
IL_67828.1 Compare	IL_2QBG_084, IL_2QBG_090, IL_4IOA_056, IL_4A1B_042, IL_3U5H_009, IL_2QWY_005, IL_3U5H_004, IL_3U5H_146, IL_2QWY_002, IL_4A1B_073, IL_1O9M_001, IL_4A1B_069, IL_1ZX7_001, IL_3T4B_001, IL_2QBG_029, IL_1S72_005, IL_4A1B_009, IL_4QCN_024, IL_1FJG_046, IL_4CUV_010, IL_4A1B_018, IL_1VX6_042, IL_4IOA_085, IL_1VX6_002, IL_3J7A_082, IL_1ZX7_007, IL_4QCN_088, IL_4CUV_153, IL_4CUV_077, IL_2AW7_047, IL_4IOA_046, IL_3U5H_037, IL_3U5H_078, IL_3MOJ_004, IL_4A1B_001, IL_1VW3_030, IL_1S72_079, IL_4IOA_005, IL_2QBG_010, IL_4IOA_021, IL_1T0E_001, IL_1VW3_010, IL_2O3X_001, IL_2AW7_025, IL_2O3X_003, IL_1VW3_058, IL_4QCN_005, IL_2QBG_027, IL_4CUV_088, IL_2AW7_024, IL_4GMA_001, IL_4C7O_002, IL_1VW3_093, IL_4CUV_004, IL_4M30_001	IL_4W21_062, IL_4W21_144, IL_4W23_085, IL_4W21_095, IL_4W21_036, IL_4W23_014, IL_4W21_045, IL_4W21_009, IL_4W23_027, IL_4W23_020	IL_1VWW_096, IL_1VX2_088, IL_1VX2_085, IL_1VWW_046, IL_1VWW_037, IL_1VWW_011

Children motifs

This motif has no children motifs.

Motif IL_67828.2 Version IL_67828.2 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_67828.2 Version IL_67828.2 of this group appears in releases 1.18 to 1.18

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Csv

Json