#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-41-52-3
1 IL_4W21_0364W210.41370528S ribosomal RNAG927C928*G735C736C737cWWcWW
2 IL_4A1B_0694A1B0.46140126S RRNAG1849C1850*G1643A1644C1645cWWcWW
3 IL_3U5H_0783U5H0.35220525S rRNAC1670C1671*G1776U1777G1778cWWcWW
4 IL_4CUV_0774CUV0.39360125S RRNAC1670C1671*G1776U1777G1778cWWcWW
5 IL_4C7O_0024C7O0.49110Single stack bendESRP RNAC8U9*A36U37G38cWWcWW
6 IL_4W21_1444W210.48480528S ribosomal RNAG4472A4473*U4481U4482C4483cWWcWW
7 IL_4A1B_0734A1B0.33590126S RRNAC1694A1695*U1802U1803G1804cWWcWW
8 IL_3J7A_0823J7A0.25780A SSU rRNAA1983A1984*U2005U2006U2007cWWcWW
9 IL_4W23_0144W230.32750218S ribosomal RNAA301A302*U218U219U220ncWWcWW
10 IL_4W23_0854W230.32860218S ribosomal RNAG1858A1859*U1839U1840C1841cWWcWW
11 IL_4W21_0954W210.31500528S ribosomal RNAC2499U2500*A2477C2478G2479cWWcWW
12 IL_1VW3_0931VW30.31430A21S ribosomal RNAU3161U3162*A3242A3243A3244ncWWncWW
13 IL_4W21_0624W210.34960528S ribosomal RNAG1681A1682*U1672U1673C1674cWWncWW
14 IL_2AW7_0252AW70.51570A16S ribosomal RNAU458A459*U472U473G474cWWcWW
15 IL_4A1B_0184A1B0.46530126S RRNAU511G512*U466A467A468cWWcWW
16 IL_1VW3_0581VW30.49950A21S ribosomal RNAU1785A1786*U1764A1765A1766cWWcWW
17 IL_3U5H_0373U5H0.40080525S rRNAC969A970*U1111A1112G1113cWWcWW
18 IL_4A1B_0424A1B0.37360126S RRNAC994A995*U1138A1139G1140cWWcWW
19 IL_1VX6_0421VX60.23380A28S ribosomal RNAC1088U1089*A1239A1240G1241cWWcWW
20 IL_1S72_0051S720.16750Single stack bend (H)0 LSU rRNAC153C154*G182A183G184cWWcWW
21 IL_2QBG_0902QBG0.30470B23S rRNAA2453G2454*C2498C2499U2500cWWcWW
22 IL_4QCN_0884QCN0.42050A23S Ribosomal RNAA2465G2466*C2510C2511U2512cWWcWW
23 IL_4IOA_0854IOA0.38850X LSU rRNAA2432G2433*C2477C2478U2479cWWcWW
24 IL_2AW7_0242AW70.40910A16S ribosomal RNAG454G455*C477A478U479cWWcWW
25 IL_4CUV_0884CUV0.35250125S RRNAC2094G2095*C1951G1952G1953ncWWncWW
26 IL_1VW3_0101VW30.00000A21S ribosomal RNAC223U224*A252A253G254cWWcWW
27 IL_1S72_0791S720.17560Single stack bend (H)0 LSU rRNAC2454A2455*U2436A2437G2438cWWcWW
28 IL_4IOA_0564IOA0.22020Single stack bend (H)X LSU rRNAC1477U1478*A1463A1464G1465ncWWcWWcWW
29 IL_2AW7_0472AW70.25140A16S ribosomal RNAC998C999*G1041A1042G1043cWWcWW
30 IL_2QBG_0292QBG0.32850B23S rRNAU850C851*G926A927A928cWWcWW
31 IL_4GMA_0014GMA0.37080ZAdenosylcobalamin riboswitchG176U177*A7G8C9cWWncWW
32 IL_4W23_0204W230.25120218S ribosomal RNAU423C424*G413A414A415cWWcWW
33 IL_4W23_0274W230.29540218S ribosomal RNAU596G597*C639A640A641cWWcWW
34 IL_1VW3_0301VW30.26920A21S ribosomal RNAG817U818*A807A808C809ncWWcWWcWW
35 IL_4W21_0094W210.30160528S ribosomal RNAG160G161*C274C275C276cWWncWW
36 IL_1FJG_0461FJG0.43150A SSU rRNAG1127C1128*G1143G1144C1145ncWWcWW
37 IL_2QBG_0272QBG0.34390B23S rRNAC837C838*G940A941G942cWWcWW
38 IL_4IOA_0214IOA0.32600Single stack bend (H)X LSU rRNAC850C851*G951A952G953cWWcWW
39 IL_4QCN_0244QCN0.30280A23S Ribosomal RNAC884C885*G985A986G987cWWcWW
40 IL_1VX6_0021VX60.22540A28S ribosomal RNAU27C28*G56A57A58cWWcWW
41 IL_4CUV_0044CUV0.19880125S RRNAC27C28*G56A57G58cWWcWW
42 IL_3U5H_0043U5H0.22780525S rRNAC27C28*G56A57G58cWWcWW
43 IL_4A1B_0014A1B0.22310126S RRNAC25C26*G54A55G56cWWcWW
44 IL_4IOA_0054IOA0.16810Single stack bend (H)X LSU rRNAC160U161*A189A190G191cWWcWW
45 IL_4QCN_0054QCN0.19870A23S Ribosomal RNAC172C173*G201A202G203cWWcWW
46 IL_2QBG_0102QBG0.17640B23S rRNAC183C184*G212A213G214cWWcWW
47 IL_3U5H_1463U5H0.2852075S rRNAC29G30*C47U48G49cWWcWW
48 IL_4CUV_1534CUV0.2745035S RRNAC29G30*C47U48G49cWWcWW
49 IL_4CUV_0104CUV0.38310125S RRNAU257G258*C163A164A165cWWcWW
50 IL_3U5H_0093U5H0.37610525S rRNAU257G258*C163A164A165cWWcWW
51 IL_4W21_0454W210.41480528S ribosomal RNAC1097G1098*C1197G1198G1199ncWWcWW
52 IL_2QWY_0022QWY0.62380ASAM-II riboswitchU21G22*C43U44A45cWWcWW
53 IL_2QWY_0052QWY0.70850BSAM-II riboswitchU21G22*C43U44A45cWWcWW
54 IL_4M30_0014M300.42750C+DRNA12U28A2*U25U26A27cWWcWW
55 IL_1O9M_0011O9M0.42991A+BEUBACTERIAL A-SITEG1405C1407*G1494U1495C1496cWWcWW
56 IL_2O3X_0012O3X0.39181Stack and bulgeA+BRNA (23-mer)G5C7*G42U43C44cWWcWW
57 IL_4IOA_0464IOA0.51201Intercalated cWW (H)X LSU rRNAU1232C1234*G1241A1242G1243cWWcWW
58 IL_2QBG_0842QBG0.56351B23S rRNAC2103U2105*A2184U2185G2186cWWcWW
59 IL_2O3X_0032O3X0.60552Decoding loop relatedA+BRNA (23-mer)G16G19*C30A31C32cWWcWW
60 IL_1ZX7_0071ZX70.60082G+HRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
61 IL_1ZX7_0011ZX70.55592A+BRNA (15-mer) + RNA (14-mer)G7G10*C26A27C28cWWcWW
62 IL_1T0E_0011T0E0.69222Decoding loop relatedA+CRNA (18-mer) + RNA (17-mer)G7G10||A*C16A17C18cWWcWW
63 IL_3T4B_0013T4B0.56181AHCV IRES pseudoknot domain plus crystallization moduleG135G137*U287A288C289cWWcWW
64 IL_4A1B_0094A1B0.58570126S RRNAU245G246*U173A174A175ncWWcWW
65 IL_3MOJ_0043MOJ0.63330Single stack bendA LSU rRNAU2522G2523*C2540A2541A2542cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CC*GAG10
CU*AAG4
GA*UUC3
CA*UAG3
AG*CCU3
UC*GAA3
UG*CAA3
GAAG*CAC3
CC*GUG2
AA*UUU2
UG*UAA2
CG*CUG2
UG*CUA2
GUC*GUC2
GC*GCC1
GC*GAC1
CU*AUG1
CA*UUG1
CU*ACG1
UU*AAA1
UA*UUG1
UA*UAA1
GG*CAU1
CGG*CG1
GU*AGC1
GU*AAC1
GG*CCC1
GC*GGC1
CAA*UG1
CG*CGG1
UA*UUA1
UAC*GAG1
CCU*AUG1
CAC*GAAG1
GAG*UAC1
Non-Watson-Crick part of the motif
SequenceCounts
*A30
*U15
*C6
*G3
AA*A3
U*U2
A*A2
G*1
A*1
C*U1
A*AA1
Annotations
  • (54)
  • Single stack bend (H) (5)
  • Decoding loop related (2)
  • Single stack bend (2)
  • Stack and bulge (1)
  • Intercalated cWW (H) (1)
  • Basepair signature
    cWW-R-cWW
    Heat map statistics
    Min 0.09 | Avg 0.50 | Max 0.99
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