Motif IL_67828.2 Version IL_67828.2 of this group appears in releases 1.18 to 1.18
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4W21_036 | 4W21 | 0.4137 | 0 | 5 | 28S ribosomal RNA | G | 927 | C | 928 | * | G | 735 | C | 736 | C | 737 | cWW | cWW | ||
2 | IL_4A1B_069 | 4A1B | 0.4614 | 0 | 1 | 26S RRNA | G | 1849 | C | 1850 | * | G | 1643 | A | 1644 | C | 1645 | cWW | cWW | ||
3 | IL_3U5H_078 | 3U5H | 0.3522 | 0 | 5 | 25S rRNA | C | 1670 | C | 1671 | * | G | 1776 | U | 1777 | G | 1778 | cWW | cWW | ||
4 | IL_4CUV_077 | 4CUV | 0.3936 | 0 | 1 | 25S RRNA | C | 1670 | C | 1671 | * | G | 1776 | U | 1777 | G | 1778 | cWW | cWW | ||
5 | IL_4C7O_002 | 4C7O | 0.4911 | 0 | Single stack bend | E | SRP RNA | C | 8 | U | 9 | * | A | 36 | U | 37 | G | 38 | cWW | cWW | |
6 | IL_4W21_144 | 4W21 | 0.4848 | 0 | 5 | 28S ribosomal RNA | G | 4472 | A | 4473 | * | U | 4481 | U | 4482 | C | 4483 | cWW | cWW | ||
7 | IL_4A1B_073 | 4A1B | 0.3359 | 0 | 1 | 26S RRNA | C | 1694 | A | 1695 | * | U | 1802 | U | 1803 | G | 1804 | cWW | cWW | ||
8 | IL_3J7A_082 | 3J7A | 0.2578 | 0 | A | SSU rRNA | A | 1983 | A | 1984 | * | U | 2005 | U | 2006 | U | 2007 | cWW | cWW | ||
9 | IL_4W23_014 | 4W23 | 0.3275 | 0 | 2 | 18S ribosomal RNA | A | 301 | A | 302 | * | U | 218 | U | 219 | U | 220 | ncWW | cWW | ||
10 | IL_4W23_085 | 4W23 | 0.3286 | 0 | 2 | 18S ribosomal RNA | G | 1858 | A | 1859 | * | U | 1839 | U | 1840 | C | 1841 | cWW | cWW | ||
11 | IL_4W21_095 | 4W21 | 0.3150 | 0 | 5 | 28S ribosomal RNA | C | 2499 | U | 2500 | * | A | 2477 | C | 2478 | G | 2479 | cWW | cWW | ||
12 | IL_1VW3_093 | 1VW3 | 0.3143 | 0 | A | 21S ribosomal RNA | U | 3161 | U | 3162 | * | A | 3242 | A | 3243 | A | 3244 | ncWW | ncWW | ||
13 | IL_4W21_062 | 4W21 | 0.3496 | 0 | 5 | 28S ribosomal RNA | G | 1681 | A | 1682 | * | U | 1672 | U | 1673 | C | 1674 | cWW | ncWW | ||
14 | IL_2AW7_025 | 2AW7 | 0.5157 | 0 | A | 16S ribosomal RNA | U | 458 | A | 459 | * | U | 472 | U | 473 | G | 474 | cWW | cWW | ||
15 | IL_4A1B_018 | 4A1B | 0.4653 | 0 | 1 | 26S RRNA | U | 511 | G | 512 | * | U | 466 | A | 467 | A | 468 | cWW | cWW | ||
16 | IL_1VW3_058 | 1VW3 | 0.4995 | 0 | A | 21S ribosomal RNA | U | 1785 | A | 1786 | * | U | 1764 | A | 1765 | A | 1766 | cWW | cWW | ||
17 | IL_3U5H_037 | 3U5H | 0.4008 | 0 | 5 | 25S rRNA | C | 969 | A | 970 | * | U | 1111 | A | 1112 | G | 1113 | cWW | cWW | ||
18 | IL_4A1B_042 | 4A1B | 0.3736 | 0 | 1 | 26S RRNA | C | 994 | A | 995 | * | U | 1138 | A | 1139 | G | 1140 | cWW | cWW | ||
19 | IL_1VX6_042 | 1VX6 | 0.2338 | 0 | A | 28S ribosomal RNA | C | 1088 | U | 1089 | * | A | 1239 | A | 1240 | G | 1241 | cWW | cWW | ||
20 | IL_1S72_005 | 1S72 | 0.1675 | 0 | Single stack bend (H) | 0 | LSU rRNA | C | 153 | C | 154 | * | G | 182 | A | 183 | G | 184 | cWW | cWW | |
21 | IL_2QBG_090 | 2QBG | 0.3047 | 0 | B | 23S rRNA | A | 2453 | G | 2454 | * | C | 2498 | C | 2499 | U | 2500 | cWW | cWW | ||
22 | IL_4QCN_088 | 4QCN | 0.4205 | 0 | A | 23S Ribosomal RNA | A | 2465 | G | 2466 | * | C | 2510 | C | 2511 | U | 2512 | cWW | cWW | ||
23 | IL_4IOA_085 | 4IOA | 0.3885 | 0 | X | LSU rRNA | A | 2432 | G | 2433 | * | C | 2477 | C | 2478 | U | 2479 | cWW | cWW | ||
24 | IL_2AW7_024 | 2AW7 | 0.4091 | 0 | A | 16S ribosomal RNA | G | 454 | G | 455 | * | C | 477 | A | 478 | U | 479 | cWW | cWW | ||
25 | IL_4CUV_088 | 4CUV | 0.3525 | 0 | 1 | 25S RRNA | C | 2094 | G | 2095 | * | C | 1951 | G | 1952 | G | 1953 | ncWW | ncWW | ||
26 | IL_1VW3_010 | 1VW3 | 0.0000 | 0 | A | 21S ribosomal RNA | C | 223 | U | 224 | * | A | 252 | A | 253 | G | 254 | cWW | cWW | ||
27 | IL_1S72_079 | 1S72 | 0.1756 | 0 | Single stack bend (H) | 0 | LSU rRNA | C | 2454 | A | 2455 | * | U | 2436 | A | 2437 | G | 2438 | cWW | cWW | |
28 | IL_4IOA_056 | 4IOA | 0.2202 | 0 | Single stack bend (H) | X | LSU rRNA | C | 1477 | U | 1478 | * | A | 1463 | A | 1464 | G | 1465 | ncWW | cWW | cWW |
29 | IL_2AW7_047 | 2AW7 | 0.2514 | 0 | A | 16S ribosomal RNA | C | 998 | C | 999 | * | G | 1041 | A | 1042 | G | 1043 | cWW | cWW | ||
30 | IL_2QBG_029 | 2QBG | 0.3285 | 0 | B | 23S rRNA | U | 850 | C | 851 | * | G | 926 | A | 927 | A | 928 | cWW | cWW | ||
31 | IL_4GMA_001 | 4GMA | 0.3708 | 0 | Z | Adenosylcobalamin riboswitch | G | 176 | U | 177 | * | A | 7 | G | 8 | C | 9 | cWW | ncWW | ||
32 | IL_4W23_020 | 4W23 | 0.2512 | 0 | 2 | 18S ribosomal RNA | U | 423 | C | 424 | * | G | 413 | A | 414 | A | 415 | cWW | cWW | ||
33 | IL_4W23_027 | 4W23 | 0.2954 | 0 | 2 | 18S ribosomal RNA | U | 596 | G | 597 | * | C | 639 | A | 640 | A | 641 | cWW | cWW | ||
34 | IL_1VW3_030 | 1VW3 | 0.2692 | 0 | A | 21S ribosomal RNA | G | 817 | U | 818 | * | A | 807 | A | 808 | C | 809 | ncWW | cWW | cWW | |
35 | IL_4W21_009 | 4W21 | 0.3016 | 0 | 5 | 28S ribosomal RNA | G | 160 | G | 161 | * | C | 274 | C | 275 | C | 276 | cWW | ncWW | ||
36 | IL_1FJG_046 | 1FJG | 0.4315 | 0 | A | SSU rRNA | G | 1127 | C | 1128 | * | G | 1143 | G | 1144 | C | 1145 | ncWW | cWW | ||
37 | IL_2QBG_027 | 2QBG | 0.3439 | 0 | B | 23S rRNA | C | 837 | C | 838 | * | G | 940 | A | 941 | G | 942 | cWW | cWW | ||
38 | IL_4IOA_021 | 4IOA | 0.3260 | 0 | Single stack bend (H) | X | LSU rRNA | C | 850 | C | 851 | * | G | 951 | A | 952 | G | 953 | cWW | cWW | |
39 | IL_4QCN_024 | 4QCN | 0.3028 | 0 | A | 23S Ribosomal RNA | C | 884 | C | 885 | * | G | 985 | A | 986 | G | 987 | cWW | cWW | ||
40 | IL_1VX6_002 | 1VX6 | 0.2254 | 0 | A | 28S ribosomal RNA | U | 27 | C | 28 | * | G | 56 | A | 57 | A | 58 | cWW | cWW | ||
41 | IL_4CUV_004 | 4CUV | 0.1988 | 0 | 1 | 25S RRNA | C | 27 | C | 28 | * | G | 56 | A | 57 | G | 58 | cWW | cWW | ||
42 | IL_3U5H_004 | 3U5H | 0.2278 | 0 | 5 | 25S rRNA | C | 27 | C | 28 | * | G | 56 | A | 57 | G | 58 | cWW | cWW | ||
43 | IL_4A1B_001 | 4A1B | 0.2231 | 0 | 1 | 26S RRNA | C | 25 | C | 26 | * | G | 54 | A | 55 | G | 56 | cWW | cWW | ||
44 | IL_4IOA_005 | 4IOA | 0.1681 | 0 | Single stack bend (H) | X | LSU rRNA | C | 160 | U | 161 | * | A | 189 | A | 190 | G | 191 | cWW | cWW | |
45 | IL_4QCN_005 | 4QCN | 0.1987 | 0 | A | 23S Ribosomal RNA | C | 172 | C | 173 | * | G | 201 | A | 202 | G | 203 | cWW | cWW | ||
46 | IL_2QBG_010 | 2QBG | 0.1764 | 0 | B | 23S rRNA | C | 183 | C | 184 | * | G | 212 | A | 213 | G | 214 | cWW | cWW | ||
47 | IL_3U5H_146 | 3U5H | 0.2852 | 0 | 7 | 5S rRNA | C | 29 | G | 30 | * | C | 47 | U | 48 | G | 49 | cWW | cWW | ||
48 | IL_4CUV_153 | 4CUV | 0.2745 | 0 | 3 | 5S RRNA | C | 29 | G | 30 | * | C | 47 | U | 48 | G | 49 | cWW | cWW | ||
49 | IL_4CUV_010 | 4CUV | 0.3831 | 0 | 1 | 25S RRNA | U | 257 | G | 258 | * | C | 163 | A | 164 | A | 165 | cWW | cWW | ||
50 | IL_3U5H_009 | 3U5H | 0.3761 | 0 | 5 | 25S rRNA | U | 257 | G | 258 | * | C | 163 | A | 164 | A | 165 | cWW | cWW | ||
51 | IL_4W21_045 | 4W21 | 0.4148 | 0 | 5 | 28S ribosomal RNA | C | 1097 | G | 1098 | * | C | 1197 | G | 1198 | G | 1199 | ncWW | cWW | ||
52 | IL_2QWY_002 | 2QWY | 0.6238 | 0 | A | SAM-II riboswitch | U | 21 | G | 22 | * | C | 43 | U | 44 | A | 45 | cWW | cWW | ||
53 | IL_2QWY_005 | 2QWY | 0.7085 | 0 | B | SAM-II riboswitch | U | 21 | G | 22 | * | C | 43 | U | 44 | A | 45 | cWW | cWW | ||
54 | IL_4M30_001 | 4M30 | 0.4275 | 0 | C+D | RNA12 | U | 28 | A | 2 | * | U | 25 | U | 26 | A | 27 | cWW | cWW | ||
55 | IL_1O9M_001 | 1O9M | 0.4299 | 1 | A+B | EUBACTERIAL A-SITE | G | 1405 | C | 1407 | * | G | 1494 | U | 1495 | C | 1496 | cWW | cWW | ||
56 | IL_2O3X_001 | 2O3X | 0.3918 | 1 | Stack and bulge | A+B | RNA (23-mer) | G | 5 | C | 7 | * | G | 42 | U | 43 | C | 44 | cWW | cWW | |
57 | IL_4IOA_046 | 4IOA | 0.5120 | 1 | Intercalated cWW (H) | X | LSU rRNA | U | 1232 | C | 1234 | * | G | 1241 | A | 1242 | G | 1243 | cWW | cWW | |
58 | IL_2QBG_084 | 2QBG | 0.5635 | 1 | B | 23S rRNA | C | 2103 | U | 2105 | * | A | 2184 | U | 2185 | G | 2186 | cWW | cWW | ||
59 | IL_2O3X_003 | 2O3X | 0.6055 | 2 | Decoding loop related | A+B | RNA (23-mer) | G | 16 | G | 19 | * | C | 30 | A | 31 | C | 32 | cWW | cWW | |
60 | IL_1ZX7_007 | 1ZX7 | 0.6008 | 2 | G+H | RNA (15-mer) + RNA (14-mer) | G | 7 | G | 10 | * | C | 26 | A | 27 | C | 28 | cWW | cWW | ||
61 | IL_1ZX7_001 | 1ZX7 | 0.5559 | 2 | A+B | RNA (15-mer) + RNA (14-mer) | G | 7 | G | 10 | * | C | 26 | A | 27 | C | 28 | cWW | cWW | ||
62 | IL_1T0E_001 | 1T0E | 0.6922 | 2 | Decoding loop related | A+C | RNA (18-mer) + RNA (17-mer) | G | 7 | G | 10||A | * | C | 16 | A | 17 | C | 18 | cWW | cWW | |
63 | IL_3T4B_001 | 3T4B | 0.5618 | 1 | A | HCV IRES pseudoknot domain plus crystallization module | G | 135 | G | 137 | * | U | 287 | A | 288 | C | 289 | cWW | cWW | ||
64 | IL_4A1B_009 | 4A1B | 0.5857 | 0 | 1 | 26S RRNA | U | 245 | G | 246 | * | U | 173 | A | 174 | A | 175 | ncWW | cWW | ||
65 | IL_3MOJ_004 | 3MOJ | 0.6333 | 0 | Single stack bend | A | LSU rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | A | 2542 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CC*GAG | 10 |
CU*AAG | 4 |
GA*UUC | 3 |
CA*UAG | 3 |
AG*CCU | 3 |
UC*GAA | 3 |
UG*CAA | 3 |
GAAG*CAC | 3 |
CC*GUG | 2 |
AA*UUU | 2 |
UG*UAA | 2 |
CG*CUG | 2 |
UG*CUA | 2 |
GUC*GUC | 2 |
GC*GCC | 1 |
GC*GAC | 1 |
CU*AUG | 1 |
CA*UUG | 1 |
CU*ACG | 1 |
UU*AAA | 1 |
UA*UUG | 1 |
UA*UAA | 1 |
GG*CAU | 1 |
CGG*CG | 1 |
GU*AGC | 1 |
GU*AAC | 1 |
GG*CCC | 1 |
GC*GGC | 1 |
CAA*UG | 1 |
CG*CGG | 1 |
UA*UUA | 1 |
UAC*GAG | 1 |
CCU*AUG | 1 |
CAC*GAAG | 1 |
GAG*UAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*A | 30 |
*U | 15 |
*C | 6 |
*G | 3 |
AA*A | 3 |
U*U | 2 |
A*A | 2 |
G* | 1 |
A* | 1 |
C*U | 1 |
A*AA | 1 |
Release history
Release | 1.18 |
---|---|
Date | 2014-10-07 |
Status | Updated, 1 parent |
Parent motifs
Children motifs
This motif has no children motifs.- Annotations
-
- (54)
- Single stack bend (H) (5)
- Decoding loop related (2)
- Single stack bend (2)
- Stack and bulge (1)
- Intercalated cWW (H) (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.09 | Avg 0.50 | Max 0.99
Coloring options: