RNA 3D Hub //

Motif IL_68638.1 Version IL_68638.1 of this group appears in releases 1.18 to 1.18

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2break 3 41-42-3
1 IL_1KXK_0031KXK0.67982Multiple bulged basesAai5g group II Self-splicing intronC42G45*U28G29cWWcWW
2 IL_3U5F_0863U5F0.73981618S rRNAU1656G1658*U1743A1744cWWcWW
3 IL_4CUX_0874CUX0.70881218S RRNAU1656G1658*U1743A1744cWWcWW
4 IL_4W21_0134W210.55054528S ribosomal RNAU184G189*C252G253cWWcWW
5 IL_4CUV_0674CUV0.63231125S RRNAU1398G1400*C1411G1412cWWncWW
6 IL_2QBG_0862QBG0.58461B23S rRNAU2202G2204*U2220G2221cWWcWW
7 IL_4IOA_0674IOA0.36222Multiple bulged basesX LSU rRNAU1881A1884*U1833G1834cWWcWW
8 IL_1XOK_0011XOK0.24292Major groove intercalationAalfalfa mosaic virus RNA 3' UTRA864G867*C846U847cWWcWW
9 IL_1XOK_0021XOK0.21242Major groove intercalationB+Aalfalfa mosaic virus RNA 3' UTRG877G880*C868C869cWWcWW
10 IL_387D_001387D0.20592Multiple bulged basesARNA PseudoknotG15A18*U1C2cWWcWW
11 IL_4KZD_0064KZD0.00002Stack outside cWWRRNA (84-MER)G49G52*C30C31cWWcWW
12 IL_1U9S_0081U9S0.35231Stack outside cWWARIBONUCLEASE PG217C219*G195C196cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUG*UA2
CACG*UG1
UCGUGG*CG1
UAG*CG1
UUG*UG1
UGAA*UG1
AAUG*CU1
GAUG*CC1
GGAA*UC1
GUUG*CC1
GGC*GC1
Non-Watson-Crick part of the motif
SequenceCounts
U*3
GA*2
AU*2
AC*1
CGUG*1
A*1
UU*1
G*1
Annotations
  • (5)
  • Multiple bulged bases (3)
  • Stack outside cWW (2)
  • Major groove intercalation (2)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.13 | Avg 0.56 | Max 0.94
    Help

    Coloring options:

    IL_1KXK_003:IL_1KXK_003 = 0IL_1KXK_003:IL_3U5F_086 = 0.1697IL_1KXK_003:IL_4CUX_087 = 0.1997IL_1KXK_003:IL_4W21_013 = 0.5726IL_1KXK_003:IL_4CUV_067 = 0.7662IL_1KXK_003:IL_2QBG_086 = 0.8483IL_1KXK_003:IL_4IOA_067 = 0.8318IL_1KXK_003:IL_1XOK_001 = 0.8609IL_1KXK_003:IL_1XOK_002 = 0.8499IL_1KXK_003:IL_387D_001 = 0.8271IL_1KXK_003:IL_4KZD_006 = 0.6798IL_1KXK_003:IL_1U9S_008 = 0.9037IL_3U5F_086:IL_1KXK_003 = 0.1697IL_3U5F_086:IL_3U5F_086 = 0IL_3U5F_086:IL_4CUX_087 = 0.1876IL_3U5F_086:IL_4W21_013 = 0.6188IL_3U5F_086:IL_4CUV_067 = 0.8721IL_3U5F_086:IL_2QBG_086 = 0.9294IL_3U5F_086:IL_4IOA_067 = 0.9239IL_3U5F_086:IL_1XOK_001 = 0.9197IL_3U5F_086:IL_1XOK_002 = 0.91IL_3U5F_086:IL_387D_001 = 0.8933IL_3U5F_086:IL_4KZD_006 = 0.7398IL_3U5F_086:IL_1U9S_008 = 0.9436IL_4CUX_087:IL_1KXK_003 = 0.1997IL_4CUX_087:IL_3U5F_086 = 0.1876IL_4CUX_087:IL_4CUX_087 = 0IL_4CUX_087:IL_4W21_013 = 0.5224IL_4CUX_087:IL_4CUV_067 = 0.8272IL_4CUX_087:IL_2QBG_086 = 0.8571IL_4CUX_087:IL_4IOA_067 = 0.8599IL_4CUX_087:IL_1XOK_001 = 0.8831IL_4CUX_087:IL_1XOK_002 = 0.8806IL_4CUX_087:IL_387D_001 = 0.8678IL_4CUX_087:IL_4KZD_006 = 0.7088IL_4CUX_087:IL_1U9S_008 = 0.9283IL_4W21_013:IL_1KXK_003 = 0.5726IL_4W21_013:IL_3U5F_086 = 0.6188IL_4W21_013:IL_4CUX_087 = 0.5224IL_4W21_013:IL_4W21_013 = 0IL_4W21_013:IL_4CUV_067 = 0.5193IL_4W21_013:IL_2QBG_086 = 0.4919IL_4W21_013:IL_4IOA_067 = 0.5209IL_4W21_013:IL_1XOK_001 = 0.6441IL_4W21_013:IL_1XOK_002 = 0.6967IL_4W21_013:IL_387D_001 = 0.7081IL_4W21_013:IL_4KZD_006 = 0.5505IL_4W21_013:IL_1U9S_008 = 0.8346IL_4CUV_067:IL_1KXK_003 = 0.7662IL_4CUV_067:IL_3U5F_086 = 0.8721IL_4CUV_067:IL_4CUX_087 = 0.8272IL_4CUV_067:IL_4W21_013 = 0.5193IL_4CUV_067:IL_4CUV_067 = 0IL_4CUV_067:IL_2QBG_086 = 0.3026IL_4CUV_067:IL_4IOA_067 = 0.4192IL_4CUV_067:IL_1XOK_001 = 0.6406IL_4CUV_067:IL_1XOK_002 = 0.6982IL_4CUV_067:IL_387D_001 = 0.716IL_4CUV_067:IL_4KZD_006 = 0.6323IL_4CUV_067:IL_1U9S_008 = 0.9417IL_2QBG_086:IL_1KXK_003 = 0.8483IL_2QBG_086:IL_3U5F_086 = 0.9294IL_2QBG_086:IL_4CUX_087 = 0.8571IL_2QBG_086:IL_4W21_013 = 0.4919IL_2QBG_086:IL_4CUV_067 = 0.3026IL_2QBG_086:IL_2QBG_086 = 0IL_2QBG_086:IL_4IOA_067 = 0.3485IL_2QBG_086:IL_1XOK_001 = 0.5196IL_2QBG_086:IL_1XOK_002 = 0.6058IL_2QBG_086:IL_387D_001 = 0.6669IL_2QBG_086:IL_4KZD_006 = 0.5846IL_2QBG_086:IL_1U9S_008 = 0.8716IL_4IOA_067:IL_1KXK_003 = 0.8318IL_4IOA_067:IL_3U5F_086 = 0.9239IL_4IOA_067:IL_4CUX_087 = 0.8599IL_4IOA_067:IL_4W21_013 = 0.5209IL_4IOA_067:IL_4CUV_067 = 0.4192IL_4IOA_067:IL_2QBG_086 = 0.3485IL_4IOA_067:IL_4IOA_067 = 0IL_4IOA_067:IL_1XOK_001 = 0.3184IL_4IOA_067:IL_1XOK_002 = 0.3719IL_4IOA_067:IL_387D_001 = 0.4158IL_4IOA_067:IL_4KZD_006 = 0.3622IL_4IOA_067:IL_1U9S_008 = 0.6028IL_1XOK_001:IL_1KXK_003 = 0.8609IL_1XOK_001:IL_3U5F_086 = 0.9197IL_1XOK_001:IL_4CUX_087 = 0.8831IL_1XOK_001:IL_4W21_013 = 0.6441IL_1XOK_001:IL_4CUV_067 = 0.6406IL_1XOK_001:IL_2QBG_086 = 0.5196IL_1XOK_001:IL_4IOA_067 = 0.3184IL_1XOK_001:IL_1XOK_001 = 0IL_1XOK_001:IL_1XOK_002 = 0.1318IL_1XOK_001:IL_387D_001 = 0.2726IL_1XOK_001:IL_4KZD_006 = 0.2429IL_1XOK_001:IL_1U9S_008 = 0.4249IL_1XOK_002:IL_1KXK_003 = 0.8499IL_1XOK_002:IL_3U5F_086 = 0.91IL_1XOK_002:IL_4CUX_087 = 0.8806IL_1XOK_002:IL_4W21_013 = 0.6967IL_1XOK_002:IL_4CUV_067 = 0.6982IL_1XOK_002:IL_2QBG_086 = 0.6058IL_1XOK_002:IL_4IOA_067 = 0.3719IL_1XOK_002:IL_1XOK_001 = 0.1318IL_1XOK_002:IL_1XOK_002 = 0IL_1XOK_002:IL_387D_001 = 0.1959IL_1XOK_002:IL_4KZD_006 = 0.2124IL_1XOK_002:IL_1U9S_008 = 0.342IL_387D_001:IL_1KXK_003 = 0.8271IL_387D_001:IL_3U5F_086 = 0.8933IL_387D_001:IL_4CUX_087 = 0.8678IL_387D_001:IL_4W21_013 = 0.7081IL_387D_001:IL_4CUV_067 = 0.716IL_387D_001:IL_2QBG_086 = 0.6669IL_387D_001:IL_4IOA_067 = 0.4158IL_387D_001:IL_1XOK_001 = 0.2726IL_387D_001:IL_1XOK_002 = 0.1959IL_387D_001:IL_387D_001 = 0IL_387D_001:IL_4KZD_006 = 0.2059IL_387D_001:IL_1U9S_008 = 0.3027IL_4KZD_006:IL_1KXK_003 = 0.6798IL_4KZD_006:IL_3U5F_086 = 0.7398IL_4KZD_006:IL_4CUX_087 = 0.7088IL_4KZD_006:IL_4W21_013 = 0.5505IL_4KZD_006:IL_4CUV_067 = 0.6323IL_4KZD_006:IL_2QBG_086 = 0.5846IL_4KZD_006:IL_4IOA_067 = 0.3622IL_4KZD_006:IL_1XOK_001 = 0.2429IL_4KZD_006:IL_1XOK_002 = 0.2124IL_4KZD_006:IL_387D_001 = 0.2059IL_4KZD_006:IL_4KZD_006 = 0IL_4KZD_006:IL_1U9S_008 = 0.3523IL_1U9S_008:IL_1KXK_003 = 0.9037IL_1U9S_008:IL_3U5F_086 = 0.9436IL_1U9S_008:IL_4CUX_087 = 0.9283IL_1U9S_008:IL_4W21_013 = 0.8346IL_1U9S_008:IL_4CUV_067 = 0.9417IL_1U9S_008:IL_2QBG_086 = 0.8716IL_1U9S_008:IL_4IOA_067 = 0.6028IL_1U9S_008:IL_1XOK_001 = 0.4249IL_1U9S_008:IL_1XOK_002 = 0.342IL_1U9S_008:IL_387D_001 = 0.3027IL_1U9S_008:IL_4KZD_006 = 0.3523IL_1U9S_008:IL_1U9S_008 = 0IL_1KXK_003IL_3U5F_086IL_4CUX_087IL_4W21_013IL_4CUV_067IL_2QBG_086IL_4IOA_067IL_1XOK_001IL_1XOK_002IL_387D_001IL_4KZD_006IL_1U9S_008Discrepancy0.000.200.400.600.80
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