Motif IL_68638.1 Version IL_68638.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KXK_003 | 1KXK | 0.6798 | 2 | Multiple bulged bases | A | Group II catalytic intron | C | 42 | G | 45 | * | U | 28 | G | 29 | cWW | cWW |
| 2 | IL_3U5F_086 | 3U5F | 0.7398 | 1 | 6 | SSU rRNA | U | 1656 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW | |
| 3 | IL_4CUX_087 | 4CUX | 0.7088 | 1 | 2 | SSU rRNA | U | 1656 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW | |
| 4 | IL_4W21_013 | 4W21 | 0.5505 | 4 | 5 | LSU rRNA | U | 184 | G | 189 | * | C | 252 | G | 253 | cWW | cWW | |
| 5 | IL_4CUV_067 | 4CUV | 0.6323 | 1 | 1 | LSU rRNA | U | 1398 | G | 1400 | * | C | 1411 | G | 1412 | cWW | ncWW | |
| 6 | IL_2QBG_086 | 2QBG | 0.5846 | 1 | B | LSU rRNA | U | 2202 | G | 2204 | * | U | 2220 | G | 2221 | cWW | cWW | |
| 7 | IL_4IOA_067 | 4IOA | 0.3622 | 2 | Multiple bulged bases | X | LSU rRNA | U | 1881 | A | 1884 | * | U | 1833 | G | 1834 | cWW | cWW |
| 8 | IL_1XOK_001 | 1XOK | 0.2429 | 2 | Major groove intercalation | A | alfalfa mosaic virus RNA 3' UTR | A | 864 | G | 867 | * | C | 846 | U | 847 | cWW | cWW |
| 9 | IL_1XOK_002 | 1XOK | 0.2124 | 2 | Major groove intercalation | B+A | alfalfa mosaic virus RNA 3' UTR | G | 877 | G | 880 | * | C | 868 | C | 869 | cWW | cWW |
| 10 | IL_387D_001 | 387D | 0.2059 | 2 | Multiple bulged bases | A | RNA Pseudoknot | G | 15 | A | 18 | * | U | 1 | C | 2 | cWW | cWW |
| 11 | IL_4KZD_006 | 4KZD | 0.0000 | 2 | Stack outside cWW | R | RNA (84-MER) | G | 49 | G | 52 | * | C | 30 | C | 31 | cWW | cWW |
| 12 | IL_1U9S_008 | 1U9S | 0.3523 | 1 | Stack outside cWW | A | RNase P class A | G | 217 | C | 219 | * | G | 195 | C | 196 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUG*UA | 2 |
| CACG*UG | 1 |
| UCGUGG*CG | 1 |
| UAG*CG | 1 |
| UUG*UG | 1 |
| UGAA*UG | 1 |
| AAUG*CU | 1 |
| GAUG*CC | 1 |
| GGAA*UC | 1 |
| GUUG*CC | 1 |
| GGC*GC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U* | 3 |
| GA* | 2 |
| AU* | 2 |
| AC* | 1 |
| CGUG* | 1 |
| A* | 1 |
| UU* | 1 |
| G* | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_68638.1 | Only in the parent motif |
|---|---|---|---|
| IL_68200.1 Compare | IL_1XOK_001, IL_387D_001, IL_1XOK_002, IL_1U9S_008, IL_4KZD_006 | IL_2QBG_086, IL_4W21_013, IL_4CUX_087, IL_1KXK_003, IL_4CUV_067, IL_4IOA_067, IL_3U5F_086 | IL_4UN5_002, IL_1VWW_148, IL_2QBG_022, IL_4QCN_095, IL_1VW3_080, IL_2QBG_097, IL_4UN3_002, IL_4OO8_002, IL_3SN2_002, IL_1VWW_139, IL_3SNP_002, IL_3U5H_031, IL_4IOA_092 |
| IL_18916.1 Compare | IL_2QBG_086, IL_1KXK_003, IL_4CUX_087, IL_3U5F_086, IL_4CUV_067 | IL_387D_001, IL_1U9S_008, IL_1XOK_001, IL_4KZD_006, IL_4W21_013, IL_4IOA_067, IL_1XOK_002 | IL_1S72_093, IL_4QCN_081 |
| IL_61513.1 Compare | IL_4IOA_067 | IL_2QBG_086, IL_387D_001, IL_4CUX_087, IL_1XOK_001, IL_1U9S_008, IL_4KZD_006, IL_1KXK_003, IL_4CUV_067, IL_4W21_013, IL_1XOK_002, IL_3U5F_086 | IL_2OZB_001, IL_1VWW_013, IL_3U5H_046 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Multiple bulged bases (3)
- Stack outside cWW (2)
- Major groove intercalation (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.56 | Max 0.94
Coloring options: