Motif IL_18916.1 Version IL_18916.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUX_087 | 4CUX | 0.1997 | 1 | 2 | 18S RRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW | |
| 2 | IL_3U5F_086 | 3U5F | 0.1697 | 1 | 6 | 18S rRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW | |
| 3 | IL_1KXK_003 | 1KXK | 0.0000 | 2 | Multiple bulged bases | A | ai5g group II Self-splicing intron | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW |
| 4 | IL_1S72_093 | 1S72 | 0.3098 | 3 | Bulged stacked bases (H) | 0 | LSU rRNA | U | 2732 | U | 2733 | * | A | 2746 | G | 2750 | cWW | cWW |
| 5 | IL_4QCN_081 | 4QCN | 0.3776 | 9 | A | 23S Ribosomal RNA | C | 2200 | C | 2201 | * | G | 2132 | G | 2142 | cWW | cWW | |
| 6 | IL_4CUV_067 | 4CUV | 0.7662 | 1 | 1 | 25S RRNA | C | 1411 | G | 1412 | * | U | 1398 | G | 1400 | ncWW | cWW | |
| 7 | IL_2QBG_086 | 2QBG | 0.8483 | 1 | B | 23S rRNA | U | 2220 | G | 2221 | * | U | 2202 | G | 2204 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UA*UUG | 2 |
| UG*CACG | 1 |
| UU*ACGUG | 1 |
| CC*GCGUAGGAUAG | 1 |
| CG*UAG | 1 |
| UG*UUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 3 |
| *AC | 1 |
| *CGU | 1 |
| *CGUAGGAUA | 1 |
| *A | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_18916.1 | Only in the parent motif |
|---|---|---|---|
| IL_84950.1 Compare | IL_1KXK_003, IL_4CUX_087, IL_3U5F_086 | IL_2QBG_086, IL_1S72_093, IL_4QCN_081, IL_4CUV_067 | IL_387D_001, IL_1U9S_008, IL_1XOK_001, IL_4NVV_072, IL_4IOA_067, IL_1XOK_002 |
| IL_04465.1 Compare | IL_2QBG_086, IL_4CUV_067 | IL_1KXK_003, IL_1S72_093, IL_4CUX_087, IL_3U5F_086, IL_4QCN_081 | IL_4CUV_143, IL_1FJG_022, IL_4CUV_108, IL_1FJG_005, IL_4FAW_014, IL_2AW7_005, IL_2QBG_107, IL_1S72_045, IL_1S72_042, IL_3U5H_063, IL_2QBG_060, IL_3D0U_005, IL_4NVV_061, IL_1S72_022, IL_4NVV_107, IL_2NZ4_007, IL_4BPP_033, IL_4C7O_003, IL_4A1B_063, IL_2AW7_029, IL_4IOA_101, IL_3U5H_137, IL_1S72_099, IL_4IOA_024, IL_4CUX_033, IL_3U5F_033, IL_1U9S_006, IL_4NVV_034, IL_3U5H_019 |
| IL_63253.1 Compare | IL_1S72_093 | IL_2QBG_086, IL_4CUX_087, IL_1KXK_003, IL_4QCN_081, IL_4CUV_067, IL_3U5F_086 |
Children motifs
| Child motif | Common motif instances | Only in IL_18916.1 | Only in the child motif |
|---|---|---|---|
| IL_68638.1 Compare | IL_2QBG_086, IL_1KXK_003, IL_4CUX_087, IL_3U5F_086, IL_4CUV_067 | IL_1S72_093, IL_4QCN_081 | IL_387D_001, IL_1U9S_008, IL_1XOK_001, IL_4KZD_006, IL_4W21_013, IL_4IOA_067, IL_1XOK_002 |
| IL_05920.1 Compare | IL_1S72_093 | IL_2QBG_086, IL_4CUX_087, IL_1KXK_003, IL_4QCN_081, IL_4CUV_067, IL_3U5F_086 | |
| IL_94403.7 Compare | IL_4QCN_081 | IL_2QBG_086, IL_4CUX_087, IL_1KXK_003, IL_4CUV_067, IL_1S72_093, IL_3U5F_086 | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 |
- Annotations
-
- (5)
- Multiple bulged bases (1)
- Bulged stacked bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.17 | Avg 0.48 | Max 0.93
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