Motif IL_12685.1 Version IL_12685.1 of this group appears in releases 1.5 to 1.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | 5-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_012 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 2 | IL_3U5F_006 | 3U5F | 0.8192 | 3 | 6 | 18S rRNA | C | 87 | U | 88 | G | 89 | * | U | 58 | C | 59 | G | 63 | cWW | cWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGU*AGA | 1 |
| CUG*UCUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 1 |
| U*CUAA | 1 |
Release history
| Release | 1.5 |
|---|---|
| Date | 2013-08-03 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_12685.1 | Only in the parent motif |
|---|---|---|---|
| IL_41341.1 Compare | IL_3U5F_006 | IL_3U5F_012 | |
| IL_34156.6 Compare | IL_3U5F_012 | IL_3U5F_006 | IL_1SI3_001, IL_2ZI0_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_12685.1 | Only in the child motif |
|---|---|---|---|
| IL_68880.1 Compare | IL_3U5F_006 | IL_3U5F_012 | IL_4BPP_006 |
| IL_15709.1 Compare | IL_3U5F_012 | IL_3U5F_006 | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.82 | Avg 0.41 | Max 0.82
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