Motif IL_77263.1 Version IL_77263.1 of this group appears in releases 0.7 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-6 | 3-8 | 4-5 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1E7K_002 | 1E7K | 0.1924 | 1 | D | RNA (22-mer) | C | 42 | G | 43 | A | 44 | G | 45 | * | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | cWW | tSH | ntSs | tHS | cWW | |
| 2 | IL_2OZB_002 | 2OZB | 0.1314 | 1 | Kink-turn from U4 | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | C | 42 | G | 43 | A | 44 | G | 45 | * | C | 28 | A | 29 | A | 30 | G | 32 | A | 33 | G | 34 | cWW | tSH | tSs | tHS | cWW |
| 3 | IL_3SIU_001 | 3SIU | 0.0000 | 1 | C | U4atac snRNA | U | 47 | G | 48 | A | 49 | G | 50 | * | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | cWW | tSH | ntSs | tHS | cWW | |
| 4 | IL_3SIV_003 | 3SIV | 0.1698 | 1 | Kink-turn from U4 | C+F | U4atac snRNA | U | 47 | G | 48 | A | 49 | G | 50 | * | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | ncWW | tSH | ntSs | tHS | cWW |
| 5 | IL_3SIV_001 | 3SIV | 0.1795 | 1 | Kink-turn from U4 | F+C | U4atac snRNA | U | 47 | G | 48 | A | 49 | G | 50 | * | C | 33 | A | 34 | A | 35 | G | 37 | A | 38 | G | 39 | cWW | tSH | ntSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAG*CAAUGAG | 3 |
| CGAG*CAAUGAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*AAUGA | 5 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_77263.1 | Only in the parent motif |
|---|---|---|---|
| IL_68939.1 Compare | IL_3SIU_001, IL_2OZB_002, IL_3SIV_003, IL_3SIV_001, IL_1E7K_002 | IL_3SIV_005, IL_3SIV_004, IL_3SIU_002, IL_1E7K_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_77263.1 | Only in the child motif |
|---|---|---|---|
| IL_77263.2 Compare | IL_3SIU_001, IL_2OZB_002, IL_3SIV_003, IL_3SIV_001, IL_1E7K_002 | IL_4LCK_001 |
- Annotations
-
- Kink-turn from U4 (3)
- Basepair signature
- cWW-tSH-tHS-tSS-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.15 | Max 0.25
Coloring options: