#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 121-122-114-115-106-97-8
1 IL_6DVK_0026DVK0.36962HRNA (95-MER)C68G69U70G73A74C75G76*C18C19G20A21G22cWWtSHtHSncBWcWW
2 IL_3Q3Z_0023Q3Z0.16901Kink-turnVCyclic di-GMP-II riboswitchC16A17A18G20A21U22G23*U54U55G56A57G58cWWntsStSHtHScWwcWW
3 IL_5GIP_0015GIP0.08161H+GC/D RNAU8U9G10G12A13U14G15*C30U31G32A33A34cWWntsStSHtHScWwcWW
4 IL_5GIP_0035GIP0.08671G+HC/D RNAU8U9G10G12A13U14G15*C30U31G32A33A34cWWntsStSHtHScWwcWW
5 IL_3NVI_0023NVI0.00001Kink-turnFRNA (24-mer)G15C16G17G19A20U21G22*C4U5G6A7C8cWWtsStSHtHScWwcWW
6 IL_3PLA_0013PLA0.07391G+HC/D guide RNAU8U9G10G12A13U14G15*C29U30G31A32A33cWWntsStSHtHScWwcWW
7 IL_3NMU_0043NMU0.08771Kink-turnERNA (34-MER)G24C25G26G28A29U30G31*C13U14G15A16C17cWWtSHtHScWwcWW
8 IL_1RLG_0041RLG0.10371D25-MERG15C16G17G19A205BU21G22*C45BU5G6A7C8cWWtsStSHtHSncWwcWW
9 IL_5G4U_0055G4U0.12551Kink-turnI+JHMKT-7C3G4A5G7A8U9C10*G13U14G15A16G17cWWtsStSHtHSncWwcWW
10 IL_5G4U_0065G4U0.12761Kink-turnJ+IHMKT-7C3G4A5G7A8U9C10*G13U14G15A16G17cWWntsStSHtHSncWwcWW
11 IL_5J7L_3905J7L0.859310DA LSU rRNAC2160C2161A2163A2171A2173C2174C2175*G2123G2124G2125G2127G2128cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUGUGAUG*CUGAA3
GCGUGAUG*CUGAC2
CGAAGAUC*GUGAG2
CGUUUGACG*CCGAG1
CAAUGAUG*UUGAG1
GCGUGA(5BU)G*C(5BU)GAC1
CCGACCUUGAAAUACC*GGGAGG1
Non-Watson-Crick part of the motif
SequenceCounts
UGUGAU*UGA3
CGUGAU*UGA2
GAAGAU*UGA2
GUUUGAC*CGA1
AAUGAU*UGA1
CGUGA(5BU)*(5BU)GA1
CGACCUUGAAAUAC*GGAG1

Release history

Release3.88
Date2024-09-11
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
  • Kink-turn (5)
  • Basepair signature
    cWW-tSS-tSH-L-tHS-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.28 | Max 0.97
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.5274 s