Motif IL_69536.3 Version IL_69536.3 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_103 | 2QBG | 0.1692 | 2 | B | LSU rRNA | U | 2687 | G | 2688 | C | 2691 | * | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | cWW | tSH | cWW | |
| 2 | IL_4NVV_101 | 4NVV | 0.1564 | 2 | A | LSU rRNA | U | 2699 | U | 2700 | C | 2703 | * | G | 2731 | G | 2732 | U | 2733 | A | 2734 | G | 2735 | cWW | tSH | cWW | |
| 3 | IL_4IOA_098 | 4IOA | 0.0000 | 2 | UAA/GAN related, with intercalation (H) | X | LSU rRNA | U | 2666 | C | 2667 | C | 2670 | * | G | 2698 | G | 2699 | U | 2700 | A | 2701 | G | 2702 | cWW | tSH | cWW |
| 4 | IL_4CUX_084 | 4CUX | 0.9648 | 3 | 2 | SSU rRNA | U | 1752 | A | 1753 | G | 1757 | * | C | 1644 | G | 1645 | C | 1646 | U | 1647 | A | 1648 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUUC*GGUAG | 1 |
| UUUCC*GGUAG | 1 |
| UCUCC*GGUAG | 1 |
| CGCUA*UAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUU*GUA | 1 |
| UUC*GUA | 1 |
| CUC*GUA | 1 |
| GCU*AAAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_69536.3 | Only in the parent motif |
|---|---|---|---|
| IL_69536.2 Compare | IL_4NVV_101, IL_2QBG_103, IL_4IOA_098 | IL_4CUX_084 |
Children motifs
| Child motif | Common motif instances | Only in IL_69536.3 | Only in the child motif |
|---|---|---|---|
| IL_69536.4 Compare | IL_4CUX_084, IL_4IOA_098, IL_2QBG_103 | IL_4NVV_101 | IL_4QCN_102 |
- Annotations
-
- (3)
- UAA/GAN related, with intercalation (H) (1)
- Basepair signature
- cWW-tSH-R-R-cWW
- Heat map statistics
- Min 0.16 | Avg 0.43 | Max 0.99
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