Motif IL_69996.1 Version IL_69996.1 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8T29_003 | 8T29 | 0.9601 | 1 | Other IL | R | RNA (90-MER) | U | 65 | G | 66 | * | C | 54 | A | 56 | cWW | cWW |
| 2 | IL_4R4V_001 | 4R4V | 0.8981 | 1 | Minor groove platform | A | VS ribozyme RNA | U | 607 | G | 608 | * | U | 777 | A | 779 | cWW | cWW |
| 3 | IL_4WF9_071 | 4WF9 | 0.4623 | 2 | Major groove intercalation | X | LSU rRNA | U | 1868 | G | 1869 | * | U | 1925 | A | 1928 | cWW | cWW |
| 4 | IL_8C3A_107 | 8C3A | 0.5995 | 1 | Single bulged A | 1 | LSU rRNA | G | 2586 | G | 2587 | * | C | 2597 | C | 2599 | cWW | cWW |
| 5 | IL_1U9S_003 | 1U9S | 0.2569 | 2 | Major groove intercalation | A | RIBONUCLEASE P | U | 116 | G | 117 | * | C | 224 | A | 227 | cWW | cWW |
| 6 | IL_1NBS_009 | 1NBS | 0.2174 | 2 | Major groove intercalation | B | RNase P class B | U | 181 | G | 182 | * | U | 228 | A | 231 | cWW | cWW |
| 7 | IL_8C3A_426 | 8C3A | 0.1474 | 5 | CM | SSU rRNA | U | 1089 | C | 1090 | * | G | 614 | A | 620 | cWW | cWW | |
| 8 | IL_4V88_416 | 4V88 | 0.1289 | 5 | A6 | SSU rRNA | U | 1104 | C | 1105 | * | G | 616 | A | 622 | cWW | cWW | |
| 9 | IL_5J7L_026 | 5J7L | 0.0691 | 5 | AA | SSU rRNA | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 10 | IL_4LFB_022 | 4LFB | 0.0000 | 5 | A | SSU rRNA | C | 880 | G | 881 | * | C | 569 | G | 575 | cWW | cWW | |
| 11 | IL_6CZR_134 | 6CZR | 0.1214 | 5 | 1a | SSU rRNA | C | 858 | G | 859 | * | C | 553 | G | 559 | cWW | cWW | |
| 12 | IL_6JXM_001 | 6JXM | 0.4533 | 2 | Multiple bulged bases | B | tRNA | G | 53 | U | 56 | * | A | 34 | C | 35 | cWW | cWW |
| 13 | IL_4WF9_098 | 4WF9 | 0.6083 | 1 | Single bulged A | X | LSU rRNA | C | 2618 | G | 2619 | * | C | 2628 | G | 2630 | cWW | cWW |
| 14 | IL_6LTU_001 | 6LTU | 0.7049 | 2 | Multiple bulged bases | B | RNA (56-mer) | A | 16 | G | 19 | * | C | 11 | U | 12 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CGUAAAG | 3 |
| UG*UAAA | 2 |
| UC*GUUAAAA | 2 |
| UG*CAA | 1 |
| UG*UUA | 1 |
| GG*CAC | 1 |
| UG*CAAA | 1 |
| GAUU*AC | 1 |
| CG*CAG | 1 |
| AUUG*CU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 3 |
| *AA | 3 |
| *GUAAA | 3 |
| *UUAAA | 2 |
| *U | 1 |
| AU* | 1 |
| UU* | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Major groove intercalation (3)
- Single bulged A (2)
- Multiple bulged bases (2)
- Minor groove platform (1)
- Other IL (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.44 | Max 0.97
Coloring options: