Motif IL_70707.1 Version IL_70707.1 of this group appears in releases 3.85 to 3.85
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4WT8_232 | 4WT8 | 0.4465 | 0 | C3 | tRNA | G | 63 | A | 64 | G | 65 | * | C | 49 | U | 50 | U | 51 | ncWW | cWW | ||
2 | IL_4WF9_055 | 4WF9 | 0.3125 | 0 | X | LSU rRNA | G | 1465 | G | 1466 | G | 1467 | * | C | 1622 | U | 1623 | C | 1624 | cWW | cWW | ||
3 | IL_4P3U_001 | 4P3U | 0.3395 | 0 | Isolated non-canonical cWW pair | A+B | RNA (23-mer) | G | 5 | U | 6 | C | 7 | * | G | 42 | U | 43 | C | 44 | cWW | cWW | |
4 | IL_8C3A_407 | 8C3A | 0.3733 | 1 | Isolated cWH basepair | CM | SSU rRNA | G | 285 | A | 286 | U | 287 | * | A | 263 | U | 265 | C | 266 | cWW | cWW | |
5 | IL_5M0H_002 | 5M0H | 0.5000 | 2 | Multiple bulged bases, near cWW | A | ASH1 E3 (42 nt-TL/TLR) | G | 8 | U | 11 | C | 12 | * | G | 34 | A | 35 | C | 36 | ncWW | cWW | cWW |
6 | IL_8C3A_468 | 8C3A | 0.4328 | 0 | Isolated non-canonical cWW pair | CM | SSU rRNA | U | 1483 | U | 1484 | G | 1485 | * | C | 1496 | U | 1497 | G | 1498 | cWW | cWW | |
7 | IL_4WF9_018 | 4WF9 | 0.4602 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | U | 705 | U | 706 | G | 707 | * | U | 638 | U | 639 | G | 640 | cWW | cWW | |
8 | IL_4KYY_002 | 4KYY | 0.4498 | 0 | Isolated non-canonical cWW pair | B+A | RNA 17-mer | U | 8 | U | 9 | G | 10 | * | U | 8 | U | 9 | G | 10 | cWW | cWW | |
9 | IL_4V88_470 | 4V88 | 0.3745 | 0 | Isolated non-canonical cWW pair | A6 | SSU rRNA | U | 1665 | U | 1666 | A | 1667 | * | U | 1734 | U | 1735 | G | 1736 | cWW | cWW | |
10 | IL_8C3A_477 | 8C3A | 0.3658 | 0 | Isolated non-canonical cWW pair | CM | SSU rRNA | U | 1652 | U | 1653 | A | 1654 | * | U | 1721 | U | 1722 | G | 1723 | ncWW | ncWw | cWW |
11 | IL_7A0S_107 | 7A0S | 0.4379 | 0 | Isolated non-canonical cWW pair | Y | 5S rRNA | U | 82 | C | 83 | G | 84 | * | C | 97 | C | 98 | G | 99 | cWW | ncBW | cWW |
12 | IL_5TBW_016 | 5TBW | 0.3565 | 0 | Isolated non-canonical cWW pair | 1 | LSU rRNA | U | 429 | U | 430 | U | 431 | * | A | 628 | U | 629 | A | 630 | cWW | cWW | |
13 | IL_4Y1M_005 | 4Y1M | 0.3132 | 0 | Isolated non-canonical cWW pair | B | E. coli yybP-ykoY riboswitch | A | 103 | U | 104 | A | 105 | * | U | 4 | U | 5 | U | 6 | cWW | ncWw | cWW |
14 | IL_8AF0_002 | 8AF0 | 0.2500 | 0 | Isolated cWH basepair | D+C | RNA (19-mer) | G | 34 | U | 35 | C | 36 | * | G | 34 | U | 35 | C | 36 | cWW | cHW | cWW |
15 | IL_2R8S_005 | 2R8S | 0.3384 | 5 | cWH basepair with bulged bases | R | P4-P6 RNA RIBOZYME DOMAIN | U | 182 | A | 187 | C | 189 | * | G | 134 | U | 135 | A | 136 | cWW | cHW | cWW |
16 | IL_1GID_013 | 1GID | 0.3620 | 5 | B | P4-P6 RNA RIBOZYME DOMAIN | U | 182 | A | 187 | C | 189 | * | G | 134 | U | 135 | A | 136 | cWW | cHW | cWW | |
17 | IL_7A0S_042 | 7A0S | 0.2907 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | C | 1252 | C | 1253 | G | 1254 | * | C | 1218 | C | 1219 | G | 1220 | cWW | ncBW | cWW |
18 | IL_4V88_453 | 4V88 | 0.3161 | 0 | Isolated cWH basepair | A6 | SSU rRNA | U | 1290 | G | 1291 | G | 1292 | * | C | 1323 | G | 1324 | A | 1325 | cWW | cHW | cWW |
19 | IL_8C3A_413 | 8C3A | 0.2248 | 0 | Isolated cWH basepair | CM | SSU rRNA | G | 387 | G | 388 | A | 389 | * | U | 404 | A | 405 | C | 406 | cWW | cHW | cWW |
20 | IL_4V88_405 | 4V88 | 0.2125 | 0 | Isolated cWH basepair | A6 | SSU rRNA | G | 389 | G | 390 | A | 391 | * | U | 406 | A | 407 | C | 408 | cWW | cHW | cWW |
21 | IL_5Y7M_007 | 5Y7M | 0.2570 | 0 | Isolated non-canonical cWW pair | D | RNA (52-MER) | G | 37 | A | 38 | U | 39 | * | A | 11 | C | 12 | C | 13 | cWW | cWW | cWW |
22 | IL_6M6R_002 | 6M6R | 0.1957 | 0 | Isolated non-canonical cWW pair | B | RNA (8-mer) | G | 2||||7_555 | C | 3||||7_555 | C | 4||||7_555 | * | G | 5 | C | 6 | C | 7 | cWW | cWW | |
23 | IL_6M6R_001 | 6M6R | 0.1957 | 0 | Isolated non-canonical cWW pair | B | RNA (8-mer) | G | 2 | C | 3 | C | 4 | * | G | 5||||7_555 | C | 6||||7_555 | C | 7||||7_555 | cWW | cWW | |
24 | IL_4WF9_042 | 4WF9 | 0.1740 | 0 | Isolated non-canonical cWW pair | X | LSU rRNA | C | 1160 | A | 1161 | C | 1162 | * | G | 1081 | C | 1082 | G | 1083 | cWW | ncWW | cWW |
25 | IL_4YHW_001 | 4YHW | 0.1753 | 0 | Isolated non-canonical cWW pair | E+C | U6 snRNA fragment | C | 68 | C | 69 | U | 70 | * | A | 11 | C | 12 | G | 13 | cWW | cWW | |
26 | IL_4V9K_064 | 4V9K | 0.2808 | 0 | Isolated non-canonical cWW pair | AW | tRNA | C | 50 | A | 51 | G | 52 | * | C | 62 | C | 63 | G | 64 | cWW | ncWWa | cWW |
27 | IL_4PDQ_004 | 4PDQ | 0.2711 | 0 | Isolated non-canonical cWW pair | B+A | RNA (23-mer) | G | 28 | U | 29 | C | 30 | * | G | 19 | U | 20 | C | 21 | cWW | ncWw | cWW |
28 | IL_5F5F_001 | 5F5F | 0.3157 | 0 | Isolated cWH basepair | B | RNA (20-mer) | U | 5 | G | 6 | C | 7 | * | G | 14 | G | 15 | A | 16 | cWW | cHW | cWW |
29 | IL_5F5F_003 | 5F5F | 0.2996 | 0 | Isolated cWH basepair | F | RNA (20-mer) | U | 5 | G | 6 | C | 7 | * | G | 14 | G | 15 | A | 16 | cWW | cHW | cWW |
30 | IL_3D0M_002 | 3D0M | 0.2682 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7||||16_545 | G | 8||||16_545 | A | 9||||16_545 | * | U | 10 | G | 11 | A | 12 | cWW | cHW | ncWW |
31 | IL_3D0M_001 | 3D0M | 0.2682 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7 | G | 8 | A | 9 | * | U | 10||||16_545 | G | 11||||16_545 | A | 12||||16_545 | cWW | cHW | ncWW |
32 | IL_2H1M_003 | 2H1M | 0.2575 | 0 | Isolated cWH basepair | B+A | RNA (16-mer) | A | 21 | G | 22 | U | 23 | * | A | 10 | A | 11 | U | 12 | cWW | ncHW | cWW |
33 | IL_2H1M_002 | 2H1M | 0.2287 | 0 | Isolated cWH basepair | A+B | RNA (16-mer) | A | 5 | G | 6 | U | 7 | * | A | 26 | A | 27 | U | 28 | cWW | ncHW | cWW |
34 | IL_5J7L_011 | 5J7L | 0.2560 | 0 | Isolated cWH basepair | AA | SSU rRNA | C | 176 | G | 177 | C | 178 | * | G | 144 | G | 145 | G | 146 | cWW | cHW | cWW |
35 | IL_4WF9_045 | 4WF9 | 0.2505 | 0 | Isolated cWH basepair | X | LSU rRNA | C | 1277 | G | 1278 | C | 1279 | * | G | 1243 | G | 1244 | G | 1245 | cWW | cHW | cWW |
36 | IL_3R1D_002 | 3R1D | 0.2578 | 0 | Isolated cWH basepair | A+B | RNA (11-mer) | C | 5 | G | 6 | G | 7 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
37 | IL_4KQ0_005 | 4KQ0 | 0.2177 | 0 | Isolated cWH basepair | E+B | RNA (19-mer) | C | 3 | G | 4 | G | 5 | * | C | 15 | G | 16 | G | 17 | cWW | cHW | cWW |
38 | IL_4KQ0_001 | 4KQ0 | 0.2174 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 3 | G | 4 | G | 5 | * | C | 15 | G | 16 | G | 17 | cWW | cHW | cWW |
39 | IL_6IA2_003 | 6IA2 | 0.2673 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) | C | 9 | G | 10||A | G | 11 | * | C | 9 | G | 10||A | G | 11||A | cWW | cHW | cWW |
40 | IL_4J50_001 | 4J50 | 0.2077 | 0 | Isolated cWH basepair | B+A | RNA (19-mer) | C | 13 | A | 14 | G | 15 | * | C | 7 | A | 8 | G | 9 | cWW | cWW | |
41 | IL_4J50_003 | 4J50 | 0.2073 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) | C | 13 | A | 14 | G | 15 | * | C | 7 | A | 8 | G | 9 | cWW | cWW | |
42 | IL_8SSW_005 | 8SSW | 0.2065 | 0 | D+C | RNA (28-MER) | G | 5 | U | 6 | C | 7 | * | G | 20 | G | 21 | C | 22 | cWW | ncWWa | cWW | |
43 | IL_4KQ0_002 | 4KQ0 | 0.1892 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 6 | G | 7 | G | 8 | * | C | 12 | G | 13 | G | 14 | cWW | cHW | cWW |
44 | IL_4KQ0_004 | 4KQ0 | 0.1887 | 0 | Isolated cWH basepair | E+B | RNA (19-mer) | C | 6 | G | 7 | G | 8 | * | C | 12 | G | 13 | G | 14 | cWW | cHW | cWW |
45 | IL_6RA4_002 | 6RA4 | 0.2287 | 0 | Isolated cWH basepair | L+M | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403 | G | 404 | A | 405 | cWW | cHW | cWW |
46 | IL_3W3S_003 | 3W3S | 0.2453 | 0 | Isolated cWH basepair | B | Selenocysteine transfer RNA | G | 47|||A | G | 47|||B | U | 47|||C | * | A | 47|||N | G | 47|||O | C | 47|||P | cWW | cHW | cWW |
47 | IL_3CZW_001 | 3CZW | 0.2504 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7 | G | 8 | A | 9 | * | U | 10||||2_555 | G | 11||||2_555 | A | 12||||2_555 | cWW | cHW | cWW |
48 | IL_3CZW_002 | 3CZW | 0.2504 | 0 | Isolated cWH basepair | X | RNA (16-mer) | U | 7||||2_555 | G | 8||||2_555 | A | 9||||2_555 | * | U | 10 | G | 11 | A | 12 | cWW | cHW | cWW |
49 | IL_3SJ2_002 | 3SJ2 | 0.2532 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) + RNA (17-mer) | C | 10 | G | 11 | G | 12 | * | C | 10 | G | 11 | G | 12 | cWW | cHW | cWW |
50 | IL_3R1C_017 | 3R1C | 0.2465 | 0 | Isolated cWH basepair | R+Q | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cHW | cWW |
51 | IL_3R1C_011 | 3R1C | 0.2530 | 0 | Isolated cWH basepair | K+L | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
52 | IL_3R1C_012 | 3R1C | 0.2407 | 0 | Isolated cWH basepair | L+K | RNA (8-mer) | C | 2 | G | 3 | G | 4 | * | C | 5 | G | 6 | G | 7 | cWW | cHW | cWW |
53 | IL_3R1C_018 | 3R1C | 0.2274 | 0 | Isolated cWH basepair | Q+R | RNA (8-mer) | C | 5 | G | 6 | G | 7 | * | C | 2 | G | 3 | G | 4 | cWW | cHW | cWW |
54 | IL_3SJ2_003 | 3SJ2 | 0.2497 | 0 | Isolated cWH basepair | B+A | RNA (17-mer) | C | 7 | G | 8 | G | 9 | * | C | 13 | G | 14 | G | 15 | cWW | cHW | cWW |
55 | IL_3SJ2_001 | 3SJ2 | 0.2361 | 0 | Isolated cWH basepair | A+B | RNA (19-mer) + RNA (17-mer) | C | 7 | G | 8 | G | 9 | * | C | 13 | G | 14 | G | 15 | cWW | cHW | cWW |
56 | IL_4E5C_001 | 4E5C | 0.2575 | 0 | Isolated cWH basepair | B+A | RNA (19-mer) | C | 9 | G | 10 | G | 11 | * | C | 9 | G | 10 | G | 11 | cWW | cHW | cWW |
57 | IL_4KQ0_003 | 4KQ0 | 0.2109 | 0 | Isolated cWH basepair | B+E | RNA (19-mer) | C | 9 | G | 10 | G | 11 | * | C | 9 | G | 10 | G | 11 | cWW | cHW | cWW |
58 | IL_1L9A_003 | 1L9A | 0.2236 | 0 | B | signal recognition particle RNA S domain | C | 123 | G | 124 | G | 125 | * | C | 225 | U | 226 | G | 227 | cWW | ncWW | cWW | |
59 | IL_406D_002 | 406D | 0.2413 | 0 | Isolated cWH basepair | E+A | RNA (17-mer) | U | 25||A | G | 26||A | G | 27||A | * | U | 8||A | G | 9||A | G | 10||A | cWW | ncHW | cWW |
60 | IL_3ICQ_003 | 3ICQ | 0.3144 | 0 | E | RNA (62-MER) | G | 3 | G | 4 | A | 5 | * | U | 68 | U | 69 | C | 70 | cWW | ncWW | cWW | |
61 | IL_1Y27_001 | 1Y27 | 0.2698 | 0 | Isolated non-canonical cWW pair | X | Purine riboswitch | C | 43 | A | 44 | A | 45 | * | U | 25 | C | 26 | G | 27 | cWW | cWW | cWW |
62 | IL_7KJT_001 | 7KJT | 0.2277 | 0 | Isolated non-canonical cWW pair | A | tRNA | G | 2 | C | 3 | C | 4 | * | G | 69 | C | 70 | C | 71 | cWW | ncWW | |
63 | IL_1ZZ5_002 | 1ZZ5 | 0.1609 | 0 | Isolated non-canonical cWW pair | A+B | RNA (15-mer) + RNA (14-mer) | G | 10 | U | 11 | C | 12 | * | G | 24 | U | 25 | C | 26 | cWW | ncWw | cWW |
64 | IL_1ZZ5_004 | 1ZZ5 | 0.1217 | 0 | Isolated non-canonical cWW pair | C+D | RNA (15-mer) + RNA (14-mer) | G | 10 | U | 11 | C | 12 | * | G | 24 | U | 25 | C | 26 | cWW | ncWw | cWW |
65 | IL_4V88_385 | 4V88 | 0.0964 | 0 | Isolated non-canonical cWW pair | A6 | SSU rRNA | A | 471 | U | 472 | A | 473 | * | U | 35 | C | 36 | U | 37 | cWW | cWW | cWW |
66 | IL_8C3A_393 | 8C3A | 0.0000 | 0 | Isolated non-canonical cWW pair | CM | SSU rRNA | A | 469 | U | 470 | A | 471 | * | U | 35 | C | 36 | U | 37 | cWW | cWW | cWW |
67 | IL_3FOZ_001 | 3FOZ | 0.1791 | 0 | Isolated cWH basepair | D | tRNA(Phe) | G | 63 | A | 64 | G | 65 | * | C | 49 | U | 50 | U | 51 | cWW | cWW | |
68 | IL_4V88_427 | 4V88 | 0.1875 | 0 | Isolated cWH basepair | A6 | SSU rRNA | U | 822 | G | 823 | G | 824 | * | C | 848 | C | 849 | A | 850 | cWW | ncHW | cWW |
69 | IL_6F4H_001 | 6F4H | 0.2258 | 0 | Isolated cWH basepair | D | U1-SL2 | G | 1 | G | 2 | C | 3 | * | G | 20 | C | 21 | C | 22 | cWW | ncHW | cWW |
70 | IL_4V88_476 | 4V88 | 0.7029 | 0 | Other IL | A6 | SSU rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGG*CGG | 15 |
GUC*GUC | 5 |
UGA*UGA | 5 |
GCC*GCC | 3 |
GAG*CUU | 2 |
UUG*UUG | 2 |
UUA*UUG | 2 |
UAAUAAGC*GUA | 2 |
GGA*UAC | 2 |
UGC*GGA | 2 |
AGU*AAU | 2 |
CGC*GGG | 2 |
CAG*CAG | 2 |
AUA*UCU | 2 |
GGG*CUC | 1 |
GAU*AAUC | 1 |
GAAUC*GAC | 1 |
UUG*CUG | 1 |
UCG*CCG | 1 |
UUU*AUA | 1 |
AUA*UUU | 1 |
CCG*CCG | 1 |
UGG*CGA | 1 |
GAU*ACC | 1 |
CAC*GCG | 1 |
CCU*ACG | 1 |
CAG*CCG | 1 |
GUC*GGC | 1 |
GGU*AGC | 1 |
CGG*CUG | 1 |
UGG*UGG | 1 |
GGA*UUC | 1 |
CAA*UCG | 1 |
UGG*CCA | 1 |
GGC*GCC | 1 |
CAG*UAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*G | 27 |
U*U | 12 |
C*C | 6 |
G*A | 4 |
A*C | 4 |
G*U | 3 |
A*A | 3 |
A*U | 2 |
AAUAAG*U | 2 |
U*C | 2 |
G*C | 2 |
A*AU | 1 |
AAU*A | 1 |
U*G | 1 |
Release history
Release | 3.85 |
---|---|
Date | 2024-06-19 |
Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated cWH basepair (38)
- Isolated non-canonical cWW pair (23)
- (6)
- cWH basepair with bulged bases (1)
- Other IL (1)
- Multiple bulged bases, near cWW (1)
- Basepair signature
- cWW-cHW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.31 | Max 0.93
Coloring options: