Motif IL_71565.2 Version IL_71565.2 of this group appears in releases 1.0 to 1.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V2F_082 | 3V2F | 0.4027 | 9 | A | 23S Ribosomal RNA | C | 2178 | C | 2179 | * | G | 2110 | G | 2120 | cWW | cWW | |
| 2 | IL_1S72_093 | 1S72 | 0.0000 | 3 | 0 | LSU rRNA | U | 2732 | U | 2733 | * | A | 2746 | G | 2750 | cWW | cWW | |
| 3 | IL_1KXK_003 | 1KXK | 0.3098 | 2 | Multiple bulged bases | A | ai5g group II Self-splicing intron | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW |
| 4 | IL_3U5F_086 | 3U5F | 0.3335 | 1 | 6 | 18S rRNA | U | 1743 | A | 1744 | * | U | 1656 | G | 1658 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGUAGGAUAG*CC | 1 |
| UU*ACGUG | 1 |
| UG*CACG | 1 |
| UA*UUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUAGGAUA* | 1 |
| *CGU | 1 |
| *AC | 1 |
| *U | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_71565.2 | Only in the parent motif |
|---|---|---|---|
| IL_71565.1 Compare | IL_3V2F_082, IL_1S72_093, IL_3U5F_086 | IL_1KXK_003 | |
| IL_89088.1 Compare | IL_1KXK_003 | IL_3U5F_086, IL_3V2F_082, IL_1S72_093 | IL_1S72_045, IL_4A1B_032, IL_1KXK_001, IL_2QBG_032, IL_3U5H_063 |
Children motifs
| Child motif | Common motif instances | Only in IL_71565.2 | Only in the child motif |
|---|---|---|---|
| IL_71565.3 Compare | IL_1KXK_003, IL_1S72_093, IL_3U5F_086 | IL_3V2F_082 | |
| IL_94403.1 Compare | IL_3V2F_082 | IL_1KXK_003, IL_1S72_093, IL_3U5F_086 | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 |
- Annotations
-
- Multiple bulged bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.17 | Avg 0.31 | Max 0.64
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