Motif IL_72158.2 Version IL_72158.2 of this group appears in releases 0.7 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	break		7		8		9		10		11		12	1-12	2-11	4-9	5-8	6-7
1	IL_4A1B_082	4A1B	0.1325	1	1	26S RRNA	C	1942	G	1943	U	1944	A	1945	A	1946	C	1947	*	G	1952	G	1953	A	1954	A	1956	A	1957	G	1958	cWW	tSH	tHH	tHS	cWW
2	IL_1S72_063	1S72	0.1067	1	0	LSU rRNA	C	1764	G	1765	U	1766	A	1767	C	1768	C	1769	*	G	1774	A	1775	A	1776	A	1778	A	1779	G	1780	cWW	tSH	tHH	tHS	cWW
3	IL_2QBG_066	2QBG	0.0890	1	B	23S rRNA	C	1686	G	1687	U	1688	A	1689	A	1690	C	1691	*	G	1696	G	1697	A	1698	A	1700	A	1701	G	1702	cWW	tSH	tHH	tHS	cWW
4	IL_3U5H_086	3U5H	0.0000	1	5	25S rRNA	C	1918	G	1919	U	1920	A	1921	A	1922	C	1923	*	G	1928	G	1929	A	1930	A	1932	A	1933	G	1934	cWW	tSH	tHH	tHS	cWW
5	IL_2ZJR_064	2ZJR	0.0959	1	X	LSU rRNA	C	1703	G	1704	U	1705	A	1706	A	1707	C	1708	*	G	1713	A	1714	A	1715	A	1717	A	1718	G	1719	cWW	tSH	tHH	ntHS	cWW
6	IL_3V2F_065	3V2F	0.2767	1	A	23S Ribosomal RNA	C	1686	G	1687	U	1688	A	1689	A	1690	C	1691	*	G	1696	G	1697	A	1698	A	1700	A	1701	G	1702	cWW	tSH	ncBW	ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGUAAC*GGAUAAG	2
CGUAAC*GGAGAAG	2
CGUACC*GAAGAAG	1
CGUAAC*GAAGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAA*GAUAA	2
GUAA*GAGAA	2
GUAC*AAGAA	1
GUAA*AAGAA	1

Release history

Release	0.7	0.8	0.9	0.10	0.11	0.12	1.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_72158.2	Only in the parent motif
IL_72158.1 Compare	IL_3U5H_086, IL_1S72_063, IL_2ZJR_064, IL_2QBG_066, IL_4A1B_082	IL_3V2F_065

Children motifs

Child motif	Common motif instances	Only in IL_72158.2	Only in the child motif
IL_72158.3 Compare	IL_3U5H_086, IL_1S72_063, IL_3V2F_065, IL_4A1B_082, IL_2QBG_066	IL_2ZJR_064	IL_4IOA_063

Annotations: (6)
Basepair signature: cWW-tSH-tSH-tHH-tHS-cWW
Heat map statistics: Min 0.09 | Avg 0.16 | Max 0.30

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Coloring options: Nucleotide numbers

Motif IL_72158.2 Version IL_72158.2 of this group appears in releases 0.7 to 1.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_72158.2 Version IL_72158.2 of this group appears in releases 0.7 to 1.0

Download

Csv

Json