Motif IL_72158.2 Version IL_72158.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_082 | 4A1B | 0.1325 | 1 | 1 | 26S RRNA | C | 1942 | G | 1943 | U | 1944 | A | 1945 | A | 1946 | C | 1947 | * | G | 1952 | G | 1953 | A | 1954 | A | 1956 | A | 1957 | G | 1958 | cWW | tSH | tHH | tHS | cWW | |
| 2 | IL_1S72_063 | 1S72 | 0.1067 | 1 | 0 | LSU rRNA | C | 1764 | G | 1765 | U | 1766 | A | 1767 | C | 1768 | C | 1769 | * | G | 1774 | A | 1775 | A | 1776 | A | 1778 | A | 1779 | G | 1780 | cWW | tSH | tHH | tHS | cWW | |
| 3 | IL_2QBG_066 | 2QBG | 0.0890 | 1 | B | 23S rRNA | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | tHH | tHS | cWW | |
| 4 | IL_3U5H_086 | 3U5H | 0.0000 | 1 | 5 | 25S rRNA | C | 1918 | G | 1919 | U | 1920 | A | 1921 | A | 1922 | C | 1923 | * | G | 1928 | G | 1929 | A | 1930 | A | 1932 | A | 1933 | G | 1934 | cWW | tSH | tHH | tHS | cWW | |
| 5 | IL_2ZJR_064 | 2ZJR | 0.0959 | 1 | X | LSU rRNA | C | 1703 | G | 1704 | U | 1705 | A | 1706 | A | 1707 | C | 1708 | * | G | 1713 | A | 1714 | A | 1715 | A | 1717 | A | 1718 | G | 1719 | cWW | tSH | tHH | ntHS | cWW | |
| 6 | IL_3V2F_065 | 3V2F | 0.2767 | 1 | A | 23S Ribosomal RNA | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | ncBW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAC*GGAUAAG | 2 |
| CGUAAC*GGAGAAG | 2 |
| CGUACC*GAAGAAG | 1 |
| CGUAAC*GAAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*GAUAA | 2 |
| GUAA*GAGAA | 2 |
| GUAC*AAGAA | 1 |
| GUAA*AAGAA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_72158.2 | Only in the parent motif |
|---|---|---|---|
| IL_72158.1 Compare | IL_3U5H_086, IL_1S72_063, IL_2ZJR_064, IL_2QBG_066, IL_4A1B_082 | IL_3V2F_065 |
Children motifs
| Child motif | Common motif instances | Only in IL_72158.2 | Only in the child motif |
|---|---|---|---|
| IL_72158.3 Compare | IL_3U5H_086, IL_1S72_063, IL_3V2F_065, IL_4A1B_082, IL_2QBG_066 | IL_2ZJR_064 | IL_4IOA_063 |
- Annotations
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.16 | Max 0.30
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