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Motif IL_74856.3 Version IL_74856.3 of this group appears in releases 1.17 to 1.17

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 6 7 81-82-52-73-43-63-75-7
1 IL_4GMA_0074GMA0.87180ZAdenosylcobalamin riboswitchC113A114C115*G128G129A130A131G132cWWcWWntSH
2 IL_4GXY_0094GXY0.75980Major groove minor groove platform with extra cWWAAdenosylcobalamin riboswitchC105A106C107*G122G123A124A125G126cWWntHScWWntSH
3 IL_1VX2_0651VX20.75142218S ribosomal RNAA1402A1405G1406*C1440U1441U1442C1443U1444cWWcWWntSHncSW
4 IL_4BPP_0714BPP0.68452A18S RRNAA1317A1320G1321*C1346U1347U1348C1349U1350cWWcWWcWWntSHncSWcSH
5 IL_2XXA_0092XXA0.71950G SSRP RNAG10U11G12*C89C90U91U92C93cWWcWWntSH
6 IL_1VW3_0761VW30.16330A21S ribosomal RNAA2725U2726A2727*U2755G2756U2757U2758U2759cWWcwWcWWcSH
7 IL_4IOA_0884IOA0.00000Major groove minor groove platform with extra cWW (H)X LSU rRNAA2438U2439C2440*G2468G2469U2470U2471U2472cWWcwWcWWcSH
8 IL_2QBG_0932QBG0.30510B23S rRNAA2459U2460A2461*U2489G2490U2491U2492U2493cWWcwWcWWncSH

3D structures

Complete motif including flanking bases
SequenceCounts
CAC*GGAAG2
ACUAG*CUUCU2
AUA*UGUUU2
GUG*CCUUC1
AUC*GGUUU1
Non-Watson-Crick part of the motif
SequenceCounts
U*GUU3
A*GAA2
CUA*UUC2
U*CUU1

Release history

Release1.17
Date2014-09-04
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_74856.3Only in the parent motif
IL_74856.2
Compare		IL_2QBG_093, IL_4BPP_071, IL_4GXY_009, IL_4IOA_088, IL_4GMA_007, IL_2XXA_009, IL_1VW3_076IL_1VX2_065IL_4NVV_090

Children motifs

Child motifCommon motif instancesOnly in IL_74856.3Only in the child motif
IL_74856.4
Compare		IL_2QBG_093, IL_4BPP_071, IL_4GXY_009, IL_4IOA_088, IL_4GMA_007, IL_2XXA_009, IL_1VW3_076IL_1VX2_065IL_4W23_065
Annotations
  • (6)
  • Major groove minor groove platform with extra cWW (1)
  • Major groove minor groove platform with extra cWW (H) (1)
    • Basepair signature
    cWW-cWW-cSH-R-cWW
    Heat map statistics
    Min 0.16 | Avg 0.60 | Max 0.98
    Help

    Coloring options:

    IL_4GMA_007:IL_4GMA_007 = 0IL_4GMA_007:IL_4GXY_009 = 0.2607IL_4GMA_007:IL_1VX2_065 = 0.7284IL_4GMA_007:IL_4BPP_071 = 0.7627IL_4GMA_007:IL_2XXA_009 = 0.9844IL_4GMA_007:IL_1VW3_076 = 0.8637IL_4GMA_007:IL_4IOA_088 = 0.8718IL_4GMA_007:IL_2QBG_093 = 0.9339IL_4GXY_009:IL_4GMA_007 = 0.2607IL_4GXY_009:IL_4GXY_009 = 0IL_4GXY_009:IL_1VX2_065 = 0.5857IL_4GXY_009:IL_4BPP_071 = 0.5951IL_4GXY_009:IL_2XXA_009 = 0.8189IL_4GXY_009:IL_1VW3_076 = 0.7637IL_4GXY_009:IL_4IOA_088 = 0.7598IL_4GXY_009:IL_2QBG_093 = 0.8421IL_1VX2_065:IL_4GMA_007 = 0.7284IL_1VX2_065:IL_4GXY_009 = 0.5857IL_1VX2_065:IL_1VX2_065 = 0IL_1VX2_065:IL_4BPP_071 = 0.3203IL_1VX2_065:IL_2XXA_009 = 0.7489IL_1VX2_065:IL_1VW3_076 = 0.7832IL_1VX2_065:IL_4IOA_088 = 0.7514IL_1VX2_065:IL_2QBG_093 = 0.817IL_4BPP_071:IL_4GMA_007 = 0.7627IL_4BPP_071:IL_4GXY_009 = 0.5951IL_4BPP_071:IL_1VX2_065 = 0.3203IL_4BPP_071:IL_4BPP_071 = 0IL_4BPP_071:IL_2XXA_009 = 0.6723IL_4BPP_071:IL_1VW3_076 = 0.7013IL_4BPP_071:IL_4IOA_088 = 0.6845IL_4BPP_071:IL_2QBG_093 = 0.7745IL_2XXA_009:IL_4GMA_007 = 0.9844IL_2XXA_009:IL_4GXY_009 = 0.8189IL_2XXA_009:IL_1VX2_065 = 0.7489IL_2XXA_009:IL_4BPP_071 = 0.6723IL_2XXA_009:IL_2XXA_009 = 0IL_2XXA_009:IL_1VW3_076 = 0.7353IL_2XXA_009:IL_4IOA_088 = 0.7195IL_2XXA_009:IL_2QBG_093 = 0.7548IL_1VW3_076:IL_4GMA_007 = 0.8637IL_1VW3_076:IL_4GXY_009 = 0.7637IL_1VW3_076:IL_1VX2_065 = 0.7832IL_1VW3_076:IL_4BPP_071 = 0.7013IL_1VW3_076:IL_2XXA_009 = 0.7353IL_1VW3_076:IL_1VW3_076 = 0IL_1VW3_076:IL_4IOA_088 = 0.1633IL_1VW3_076:IL_2QBG_093 = 0.3445IL_4IOA_088:IL_4GMA_007 = 0.8718IL_4IOA_088:IL_4GXY_009 = 0.7598IL_4IOA_088:IL_1VX2_065 = 0.7514IL_4IOA_088:IL_4BPP_071 = 0.6845IL_4IOA_088:IL_2XXA_009 = 0.7195IL_4IOA_088:IL_1VW3_076 = 0.1633IL_4IOA_088:IL_4IOA_088 = 0IL_4IOA_088:IL_2QBG_093 = 0.3051IL_2QBG_093:IL_4GMA_007 = 0.9339IL_2QBG_093:IL_4GXY_009 = 0.8421IL_2QBG_093:IL_1VX2_065 = 0.817IL_2QBG_093:IL_4BPP_071 = 0.7745IL_2QBG_093:IL_2XXA_009 = 0.7548IL_2QBG_093:IL_1VW3_076 = 0.3445IL_2QBG_093:IL_4IOA_088 = 0.3051IL_2QBG_093:IL_2QBG_093 = 0IL_4GMA_007IL_4GXY_009IL_1VX2_065IL_4BPP_071IL_2XXA_009IL_1VW3_076IL_4IOA_088IL_2QBG_093Discrepancy0.000.200.400.600.80
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