Motif IL_74856.2 Version IL_74856.2 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 3-7 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XXA_009 | 2XXA | 0.6971 | 0 | G | SSRP RNA | G | 10 | U | 11 | G | 12 | * | C | 89 | C | 90 | U | 91 | U | 92 | C | 93 | cWW | cWW | ntSH | |||||
| 2 | IL_2QBG_093 | 2QBG | 0.3585 | 0 | B | LSU rRNA | A | 2459 | U | 2460 | A | 2461 | * | U | 2489 | G | 2490 | U | 2491 | U | 2492 | U | 2493 | cWW | cwW | cWW | ncSH | ||||
| 3 | IL_4IOA_088 | 4IOA | 0.1196 | 0 | Major groove minor groove platform with extra cWW (H) | X | LSU rRNA | A | 2438 | U | 2439 | C | 2440 | * | G | 2468 | G | 2469 | U | 2470 | U | 2471 | U | 2472 | cWW | cwW | cWW | cSH | |||
| 4 | IL_4NVV_090 | 4NVV | 0.0000 | 0 | A | LSU rRNA | A | 2471 | U | 2472 | C | 2473 | * | G | 2501 | G | 2502 | U | 2503 | U | 2504 | U | 2505 | cWW | cwW | cWW | ncSH | ||||
| 5 | IL_1VW3_076 | 1VW3 | 0.1394 | 0 | A | LSU rRNA | A | 2725 | U | 2726 | A | 2727 | * | U | 2755 | G | 2756 | U | 2757 | U | 2758 | U | 2759 | cWW | cwW | cWW | cSH | ||||
| 6 | IL_4BPP_071 | 4BPP | 0.6526 | 2 | A | SSU rRNA | A | 1317 | A | 1320 | G | 1321 | * | C | 1346 | U | 1347 | U | 1348 | C | 1349 | U | 1350 | cWW | cWW | cWW | ntSH | ncSW | cSH | ||
| 7 | IL_4GXY_009 | 4GXY | 0.7339 | 0 | Major groove minor groove platform with extra cWW | A | Cobalamin riboswitch | C | 105 | A | 106 | C | 107 | * | G | 122 | G | 123 | A | 124 | A | 125 | G | 126 | cWW | ntHS | cWW | ntSH | |||
| 8 | IL_4GMA_007 | 4GMA | 0.8433 | 0 | Z | Cobalamin riboswitch | C | 113 | A | 114 | C | 115 | * | G | 128 | G | 129 | A | 130 | A | 131 | G | 132 | cWW | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUA*UGUUU | 2 |
| AUC*GGUUU | 2 |
| CAC*GGAAG | 2 |
| GUG*CCUUC | 1 |
| ACUAG*CUUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GUU | 4 |
| A*GAA | 2 |
| U*CUU | 1 |
| CUA*UUC | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_74856.2 | Only in the parent motif |
|---|---|---|---|
| IL_74856.1 Compare | IL_2QBG_093, IL_4BPP_071, IL_4NVV_090, IL_4GMA_007, IL_4IOA_088, IL_2XXA_009, IL_1VW3_076 | IL_4GXY_009 | IL_3ZP8_001 |
| IL_32261.1 Compare | IL_4GXY_009 | IL_2QBG_093, IL_4BPP_071, IL_4NVV_090, IL_4GMA_007, IL_4IOA_088, IL_2XXA_009, IL_1VW3_076 | IL_1FJG_063, IL_3U5F_021, IL_4BPP_019 |
Children motifs
| Child motif | Common motif instances | Only in IL_74856.2 | Only in the child motif |
|---|---|---|---|
| IL_74856.3 Compare | IL_2QBG_093, IL_4BPP_071, IL_4GXY_009, IL_4IOA_088, IL_4GMA_007, IL_2XXA_009, IL_1VW3_076 | IL_4NVV_090 | IL_1VX2_065 |
- Annotations
-
- (6)
- Major groove minor groove platform with extra cWW (1)
- Major groove minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-cWW-cSH-R-cWW
- Heat map statistics
- Min 0.12 | Avg 0.56 | Max 0.98
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