Motif IL_74856.2 Version IL_74856.2 of this group appears in releases 1.15 to 1.15

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6		7		8	1-8	2-5	2-7	3-4	3-6	3-7	5-7
1	IL_2XXA_009	2XXA	0.6971	0		G	SSRP RNA	G	10	U	11	G	12	*	C	89	C	90	U	91	U	92	C	93	cWW			cWW	ntSH
2	IL_2QBG_093	2QBG	0.3585	0		B	23S rRNA	A	2459	U	2460	A	2461	*	U	2489	G	2490	U	2491	U	2492	U	2493	cWW		cwW	cWW			ncSH
3	IL_4IOA_088	4IOA	0.1196	0	Major groove minor groove platform with extra cWW (H)	X	LSU rRNA	A	2438	U	2439	C	2440	*	G	2468	G	2469	U	2470	U	2471	U	2472	cWW		cwW	cWW			cSH
4	IL_4NVV_090	4NVV	0.0000	0		A	23S Ribosomal RNA	A	2471	U	2472	C	2473	*	G	2501	G	2502	U	2503	U	2504	U	2505	cWW		cwW	cWW			ncSH
5	IL_1VW3_076	1VW3	0.1394	0		A	21S ribosomal RNA	A	2725	U	2726	A	2727	*	U	2755	G	2756	U	2757	U	2758	U	2759	cWW		cwW	cWW			cSH
6	IL_4BPP_071	4BPP	0.6526	2		A	18S RRNA	A	1317	A	1320	G	1321	*	C	1346	U	1347	U	1348	C	1349	U	1350	cWW	cWW		cWW	ntSH	ncSW	cSH
7	IL_4GXY_009	4GXY	0.7339	0	Major groove minor groove platform with extra cWW	A	Adenosylcobalamin riboswitch	C	105	A	106	C	107	*	G	122	G	123	A	124	A	125	G	126	cWW	ntHS		cWW	ntSH
8	IL_4GMA_007	4GMA	0.8433	0		Z	Adenosylcobalamin riboswitch	C	113	A	114	C	115	*	G	128	G	129	A	130	A	131	G	132	cWW			cWW	ntSH

3D structures

Complete motif including flanking bases

Sequence	Counts
AUA*UGUUU	2
AUC*GGUUU	2
CAC*GGAAG	2
GUG*CCUUC	1
ACUAG*CUUCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*GUU	4
A*GAA	2
U*CUU	1
CUA*UUC	1

Release history

Release	1.15
Date	2014-06-20
Status	Updated, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_74856.2	Only in the parent motif
IL_74856.1 Compare	IL_2QBG_093, IL_4BPP_071, IL_4NVV_090, IL_4GMA_007, IL_4IOA_088, IL_2XXA_009, IL_1VW3_076	IL_4GXY_009	IL_3ZP8_001
IL_32261.1 Compare	IL_4GXY_009	IL_2QBG_093, IL_4BPP_071, IL_4NVV_090, IL_4GMA_007, IL_4IOA_088, IL_2XXA_009, IL_1VW3_076	IL_1FJG_063, IL_3U5F_021, IL_4BPP_019

Children motifs

Child motif	Common motif instances	Only in IL_74856.2	Only in the child motif
IL_74856.3 Compare	IL_2QBG_093, IL_4BPP_071, IL_4GXY_009, IL_4IOA_088, IL_4GMA_007, IL_2XXA_009, IL_1VW3_076	IL_4NVV_090	IL_1VX2_065

Annotations: (6)
Major groove minor groove platform with extra cWW (1)
Major groove minor groove platform with extra cWW (H) (1)
Basepair signature: cWW-cWW-cSH-R-cWW
Heat map statistics: Min 0.12 | Avg 0.56 | Max 0.98

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Coloring options: Nucleotide numbers

Motif IL_74856.2 Version IL_74856.2 of this group appears in releases 1.15 to 1.15 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_74856.2 Version IL_74856.2 of this group appears in releases 1.15 to 1.15

Download

Csv

Json