Motif IL_74876.2 Version IL_74876.2 of this group appears in releases 1.0 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3OWZ_004 | 3OWZ | 0.0751 | 1 | A | Domain II of glycine riboswitch | G | 38 | C | 39 | A | 40 | A | 41 | G | 42 | * | U | 61 | G | 62 | A | 63 | A | 64 | C | 66 | cWW | tWH | tHS | cWW |
| 2 | IL_3OWZ_008 | 3OWZ | 0.0000 | 1 | B | Domain II of glycine riboswitch | G | 38 | C | 39 | A | 40 | A | 41 | G | 42 | * | U | 61 | G | 62 | A | 63 | A | 64 | C | 66 | cWW | tWH | tHS | cWW |
| 3 | IL_4A1B_008 | 4A1B | 0.6771 | 0 | 1 | 26S RRNA | U | 167 | G | 168 | A | 169 | A | 170 | A | 171 | * | U | 248 | G | 249 | U | 250 | A | 251 | A | 252 | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAG*UGAAAC | 2 |
| UGAAA*UGUAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA*GAAA | 2 |
| GAA*GUA | 1 |
Release history
| Release | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_74876.2 | Only in the parent motif |
|---|---|---|---|
| IL_74876.1 Compare | IL_3OWZ_004, IL_3OWZ_008 | IL_4A1B_008 | |
| IL_62661.2 Compare | IL_4A1B_008 | IL_3OWZ_004, IL_3OWZ_008 | IL_2ZJR_070, IL_2ZJR_048, IL_3V2F_071 |
Children motifs
| Child motif | Common motif instances | Only in IL_74876.2 | Only in the child motif |
|---|---|---|---|
| IL_74876.3 Compare | IL_3OWZ_004, IL_4A1B_008, IL_3OWZ_008 | IL_1VX2_089 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tWH-L-R-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.32 | Max 0.69
Coloring options: