#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 121-122-102-113-104-95-86-7
1 IL_6DVK_0046DVK0.25240tSH-tHW-tHS-cWWHRNA (95-MER)C52U53A54C55C56C57*G38A39A40C41A42G43cWWtSHtHWncBWcWW
2 IL_1MFQ_0071MFQ0.13360tSH-tHW-tHS-cWWA SRP RNAC190C191A192G193G194U195*G204A205G206C207A208G209cWWtWHntSHtHWtHScWWcWW
3 IL_1LNT_0021LNT0.00000tSH-tHW-tHS-cWWA+BRNA (12-mer)U4C5A6G7G8U9*A16A17G18C19A20G21cWWtSHtHWtHScWWcWW
4 IL_3LQX_0023LQX0.14910tSH-tHW-tHS-cWWBSRP RNAU146C147A148G149G150U151*A160A161G162C163A164G165cWWtSHtHWtHScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCAGGU*AAGCAG2
CUACCC*GAACAG1
CCAGGU*GAGCAG1
Non-Watson-Crick part of the motif
SequenceCounts
CAGG*AGCA3
UACC*AACA1

Release history

Release3.883.89
Date2024-09-112024-10-09
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tSH-tHW-tHS-cWW (4)
  • Basepair signature
    cWW-tSH-tHW-tHS-cWW-cWW
    Heat map statistics
    Min 0.13 | Avg 0.15 | Max 0.29
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