Motif IL_76488.2 Version IL_76488.2 of this group appears in releases 3.80 to 3.84

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	2-5	3-4
1	IL_5VSU_003	5VSU	0.5825	0	Single stack bend	I	U6 snRNA	A	75	A	76	G	77	*	C	69	U	70	cWW		cWW
2	IL_7RQB_058	7RQB	0.5665	0	Single stack bend	1A	LSU rRNA	G	1448	A	1449	G	1450	*	C	1462	C	1463	cWW		cWW
3	IL_7KGA_006	7KGA	0.5913	0	Single stack bend	B	Flavivirus DB element	A	37	C	38	U	39	*	A	15	U	16	cWW		cWW
4	IL_7RQB_091	7RQB	0.4323	0	Single stack bend	1A	LSU rRNA	C	2498	C	2499	U	2500	*	A	2453	G	2454	cWW		cWW
5	IL_7A0S_083	7A0S	0.3753	0	Single stack bend	X	LSU rRNA	C	2477	C	2478	U	2479	*	A	2432	G	2433	cWW		cWW
6	IL_4WF9_089	4WF9	0.3385	0	Single stack bend	X	LSU rRNA	C	2525	C	2526	U	2527	*	A	2480	G	2481	cWW		cWW
7	IL_5TBW_081	5TBW	0.4895	0	Single stack bend	1	LSU rRNA	C	1951	G	1952	G	1953	*	C	2094	G	2095	cWW		cWW
8	IL_5J7L_044	5J7L	0.3744	0	Single stack bend	AA	SSU rRNA	G	1041	A	1042	G	1043	*	C	998	C	999	cWW		cWW
9	IL_8C3A_091	8C3A	0.3421	0	Single stack bend	1	LSU rRNA	C	2182	U	2183	G	2184	*	C	2215	G	2216	cWW		cWW
10	IL_5J7L_269	5J7L	0.3474	0	Single stack bend	DA	LSU rRNA	G	926	A	927	A	928	*	U	850	C	851	cWW		cWW
11	IL_4V9F_081	4V9F	0.3201	0	Single stack bend	0	LSU rRNA	U	2436	A	2437	G	2438	*	C	2454	A	2455	cWW		cWW
12	IL_7A0S_054	7A0S	0.2234	0	Single stack bend	X	LSU rRNA	A	1463	A	1464	G	1465	*	C	1477	U	1478	cWW		cWW
13	IL_5J7L_032	5J7L	0.2677	0	Single stack bend	AA	SSU rRNA	A	746	A	747	G	748	*	C	658	U	659	cWW		cWW
14	IL_5TBW_009	5TBW	0.2436	0	Single stack bend	1	LSU rRNA	C	163	A	164	A	165	*	U	257	G	258	cWW		cWW
15	IL_5TBW_375	5TBW	0.2250	0	Single stack bend	AS	5S rRNA	C	47	U	48	G	49	*	C	29	G	30	cWW		cWW
16	IL_8C3A_146	8C3A	0.2360	0	Single stack bend	3	5S rRNA	C	47	C	48	G	49	*	C	29	G	30	cWW		cWW
17	IL_7KGA_003	7KGA	0.2338	0	Single stack bend	A	Flavivirus DB element	A	37	C	38	U	39	*	A	15	U	16	cWW		cWW
18	IL_8C3A_110	8C3A	0.3111	1	Single stack bend with bulge	1	LSU rRNA	G	2742	U	2743	C	2745	*	G	2759	C	2760	cWW		cWW
19	IL_8C3A_012	8C3A	0.2923	0	Single stack bend	1	LSU rRNA	A	236	U	237	G	238	*	C	177	U	178	cWW		cWW
20	IL_4C7O_002	4C7O	0.3204	0	Single stack bend	E	SRP RNA	A	36	U	37	G	38	*	C	8	U	9	cWW		cWW
21	IL_8C3A_076	8C3A	0.2037	0	Single stack bend	1	LSU rRNA	G	1772	U	1773	G	1774	*	C	1666	C	1667	cWW		cWW
22	IL_5TBW_070	5TBW	0.2141	0	Single stack bend	1	LSU rRNA	G	1776	U	1777	G	1778	*	C	1670	C	1671	cWW		cWW
23	IL_7RQB_005	7RQB	0.0000	0	Single stack bend	1A	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW		cWW
24	IL_4WF9_007	4WF9	0.1536	0	Single stack bend	X	LSU rRNA	G	215	A	216	G	217	*	C	186	C	187	cWW		cWW
25	IL_5J7L_249	5J7L	0.2094	0	Single stack bend	DA	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW		cWW
26	IL_7A0S_005	7A0S	0.2013	0	Single stack bend	X	LSU rRNA	A	189	A	190	G	191	*	C	160	U	161	cWW		cWW
27	IL_7MLX_001	7MLX	0.1984	0	Single stack bend	R	RNA (65-MER)	G	48	A	49	U	50	*	A	37	C	38	cWW		cWW
28	IL_8C3A_004	8C3A	0.2246	0	Single stack bend (H)	1	LSU rRNA	G	55	A	56	G	57	*	C	26	C	27	cWW		ncWW
29	IL_5TBW_004	5TBW	0.2551	0	Single stack bend	1	LSU rRNA	G	56	A	57	G	58	*	C	27	C	28	cWW		cWW
30	IL_4V9F_005	4V9F	0.2492	0	Single stack bend	0	LSU rRNA	G	182	A	183	G	184	*	C	153	C	154	cWW		cWW
31	IL_5TBW_035	5TBW	0.3545	0	Single stack bend	1	LSU rRNA	U	1111	A	1112	G	1113	*	C	969	A	970	cWW		cWW
32	IL_8C3A_038	8C3A	0.3400	0	Single stack bend (H)	1	LSU rRNA	U	1107	A	1108	G	1109	*	C	965	A	966	cWW		cWW
33	IL_4UYK_002	4UYK	0.4218	0	Not an internal loop	R	SRP RNA	G	78	C	79	G	80	*	C	121	C	122		ncwW	cWW
34	IL_5TBW_101	5TBW	0.3963	1	Single stack bend with bulge	1	LSU rRNA	G	2770	U	2771	C	2773	*	G	2787	C	2788	cWW		cWW
35	IL_4V83_236	4V83	0.4800	0	Single stack bend	CV	domain 3 of PSIC IGR IRES RNA	C	6155	A	6156	A	6157	*	U	6172	G	6173	cWW		cWW
36	IL_4LFB_041	4LFB	0.3695	0	Single stack bend	A	SSU rRNA	G	1002	G	1003	G	1003\|\|\|A	*	C	1038	C	1039	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAG*CC	8
AAG*CU	4
CCU*AG	3
UAG*CA	3
ACU*AU	2
CUG*CG	2
CAA*UG	2
GUCC*GC	2
AUG*CU	2
GUG*CC	2
CGG*CG	1
GAA*UC	1
CCG*CG	1
GAU*AC	1
GCG*CC	1
GGG*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	19
C*	7
U*	6
G*	2
UC*	2

Release history

Release	3.80	3.81	3.82	3.83	3.84
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single stack bend (31)
Single stack bend with bulge (2)
Single stack bend (H) (2)
Not an internal loop (1)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.09 | Avg 0.36 | Max 0.69

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