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Motif IL_76488.5 Version IL_76488.5 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-53-4
1 IL_4UYK_0024UYK0.52810Not an internal loopRSRP RNAG78C79G80*C121C122ncwWcWW
2 IL_5TBW_1015TBW0.44121Single stack bend with bulge1 LSU rRNAG2770U2771C2773*G2787C2788cWWcWW
3 IL_4V83_2364V830.51150Single stack bendCVdomain 3 of PSIC IGR IRES RNAC6155A6156A6157*U6172G6173cWWcWW
4 IL_4LFB_0414LFB0.42780Single stack bendA SSU rRNAG1002G1003G1003|||A*C1038C1039cWWcWW
5 IL_8C3A_1108C3A0.46671Single stack bend with bulge1 LSU rRNAG2742U2743C2745*G2759C2760cWWcWW
6 IL_8C3A_0128C3A0.53860Single stack bend1 LSU rRNAA236U237G238*C177U178cWWcWW
7 IL_4C7O_0024C7O0.61270Single stack bendESRP RNAA36U37G38*C8U9cWWcWW
8 IL_8C3A_0768C3A0.51680Single stack bend1 LSU rRNAG1772U1773G1774*C1666C1667cWWcWW
9 IL_5TBW_0705TBW0.48040Single stack bend1 LSU rRNAG1776U1777G1778*C1670C1671cWWcWW
10 IL_5J7L_2495J7L0.54750Single stack bendDA LSU rRNAG212A213G214*C183C184cWWcWW
11 IL_4WF9_0074WF90.51570Single stack bendX LSU rRNAG215A216G217*C186C187cWWcWW
12 IL_8C3A_0048C3A0.51720Single stack bend (H)1 LSU rRNAG55A56G57*C26C27cWWncWW
13 IL_5TBW_0045TBW0.55520Single stack bend1 LSU rRNAG56A57G58*C27C28cWWcWW
14 IL_4V9F_0054V9F0.49720Single stack bend0 LSU rRNAG182A183G184*C153C154cWWcWW
15 IL_8VTW_0058VTW0.46500Single stack bend (H)1A LSU rRNAG212A213G214*C183C184cWWcWW
16 IL_7MLX_0017MLX0.46260Single stack bendRRNA (65-MER)G48A49U50*A37C38cWWcWW
17 IL_7A0S_0057A0S0.49690Single stack bendX LSU rRNAA189A190G191*C160U161cWWcWW
18 IL_5TBW_0095TBW0.47130Single stack bend1 LSU rRNAC163A164A165*U257G258cWWcWW
19 IL_5TBW_3755TBW0.41980Single stack bendAS 5S rRNAC47U48G49*C29G30cWWcWW
20 IL_8C3A_1468C3A0.40560Single stack bend3 5S rRNAC47C48G49*C29G30cWWcWW
21 IL_7KGA_0037KGA0.46840Single stack bendAFlavivirus DB elementA37C38U39*A15U16cWWcWW
22 IL_8C3A_0388C3A0.50850Single stack bend (H)1 LSU rRNAU1107A1108G1109*C965A966cWWcWW
23 IL_5TBW_0355TBW0.55320Single stack bend1 LSU rRNAU1111A1112G1113*C969A970cWWcWW
24 IL_4WF9_0894WF90.43340Single stack bendX LSU rRNAC2525C2526U2527*A2480G2481cWWcWW
25 IL_8VTW_0908VTW0.35630Single stack bend (H)1A LSU rRNAC2498C2499U2500*A2453G2454cWWcWW
26 IL_7A0S_0837A0S0.35160Single stack bendX LSU rRNAC2477C2478U2479*A2432G2433cWWcWW
27 IL_8C3A_0918C3A0.39900Single stack bend1 LSU rRNAC2182U2183G2184*C2215G2216cWWcWW
28 IL_7A0S_0547A0S0.45000Single stack bendX LSU rRNAA1463A1464G1465*C1477U1478cWWcWW
29 IL_5J7L_0325J7L0.41520Single stack bendAA SSU rRNAA746A747G748*C658U659cWWcWW
30 IL_4V9F_0814V9F0.39120Single stack bend0 LSU rRNAU2436A2437G2438*C2454A2455cWWcWW
31 IL_5J7L_2695J7L0.45020Single stack bendDA LSU rRNAG926A927A928*U850C851cWWcWW
32 IL_5J7L_0445J7L0.34810Single stack bendAA SSU rRNAG1041A1042G1043*C998C999cWWcWW
33 IL_5TBW_0815TBW0.00000Single stack bend1 LSU rRNAC1951G1952G1953*C2094G2095cWWcWW
34 IL_7KGA_0067KGA0.43850Single stack bendBFlavivirus DB elementA37C38U39*A15U16cWWcWW
35 IL_8VTW_0578VTW0.39760Single stack bend (H)1A LSU rRNAG1448A1449G1450*C1462C1463cWWcWW
36 IL_5VSU_0035VSU0.52710Single stack bendI U6 snRNAA75A76G77*C69U70cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAG*CC8
AAG*CU4
UAG*CA3
CCU*AG3
GUCC*GC2
CAA*UG2
AUG*CU2
GUG*CC2
CUG*CG2
ACU*AU2
GCG*CC1
GGG*CC1
GAU*AC1
CCG*CG1
GAA*UC1
CGG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
A*19
C*7
U*6
UC*2
G*2

Release history

Release3.87
Date2024-08-14
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Single stack bend (28)
  • Single stack bend (H) (5)
  • Single stack bend with bulge (2)
  • Not an internal loop (1)
    • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.09 | Avg 0.36 | Max 0.69
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