Motif IL_77152.1 Version IL_77152.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 3-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1Y0Q_002 | 1Y0Q | 0.3549 | 0 | A | Group I catalytic intron | U | 92 | A | 93 | A | 94 | G | 95 | C | 96 | * | G | 111 | A | 112 | A | 113 | A | 114 | ncWW | cWW | ||
| 2 | IL_1U6B_004 | 1U6B | 0.0000 | 0 | B | 197-MER | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | * | G | 119 | A | 120 | A | 121 | G | 122 | cWW | cWW | cWW | |
| 3 | IL_3CUN_001 | 3CUN | 0.8814 | 1 | C | RNA (92-MER) | U | 44 | A | 45 | U | 47 | G | 48 | G | 49 | * | C | 22 | A | 23 | G | 24 | G | 25 | cWW | cBW | cWW | cWW |
| 4 | IL_3J7A_010 | 3J7A | 0.9207 | 0 | A | SSU rRNA | C | 119 | U | 120 | A | 121 | C | 122 | U | 123 | * | A | 302 | U | 303 | C | 304 | G | 305 | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAGC*GAAA | 1 |
| CAAGC*GAAG | 1 |
| UAUUGG*CAGG | 1 |
| CUACU*AUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAG*AA | 2 |
| AUUG*AG | 1 |
| UAC*UC | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_77152.1 | Only in the parent motif |
|---|---|---|---|
| IL_17204.2 Compare | IL_3CUN_001 | IL_1Y0Q_002, IL_1U6B_004, IL_3J7A_010 | IL_4CUV_129, IL_4A1B_075 |
| IL_38488.1 Compare | IL_1Y0Q_002 | IL_1U6B_004, IL_3J7A_010, IL_3CUN_001 | IL_4A1B_029 |
| IL_77920.1 Compare | IL_3J7A_010 | IL_1Y0Q_002, IL_1U6B_004, IL_3CUN_001 | IL_1NUV_002, IL_1NUV_003, IL_429D_002, IL_3BNQ_002, IL_2QBG_108 |
| IL_10743.1 Compare | IL_1U6B_004 | IL_1Y0Q_002, IL_3CUN_001, IL_3J7A_010 | IL_1MFQ_001, IL_1VX2_015, IL_4CUV_104, IL_1J2B_001, IL_1VWW_129 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.35 | Avg 0.56 | Max 0.97
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