Motif IL_78493.1 Version IL_78493.1 of this group appears in releases 0.1 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_064 | 2ZJR | 0.8965 | 1 | X | LSU rRNA | C | 1703 | G | 1704 | U | 1705 | A | 1706 | A | 1707 | C | 1708 | * | G | 1713 | A | 1714 | A | 1715 | A | 1717 | A | 1718 | G | 1719 | cWW | tSH | tHH | ntHS | cWW |
| 2 | IL_1S72_063 | 1S72 | 0.0000 | 1 | 0 | LSU rRNA | C | 1764 | G | 1765 | U | 1766 | A | 1767 | C | 1768 | C | 1769 | * | G | 1774 | A | 1775 | A | 1776 | A | 1778 | A | 1779 | G | 1780 | cWW | tSH | tHH | tHS | cWW |
| 3 | IL_2ZJR_026 | 2ZJR | 0.1665 | 0 | X | LSU rRNA | C | 870 | U | 871 | G | 872 | U | 873 | A | 874 | G | 875 | * | C | 927 | G | 928 | A | 929 | A | 930 | G | 931 | G | 932 | cWW | ncWW | ntWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAC*GAAGAAG | 1 |
| CGUACC*GAAGAAG | 1 |
| CUGUAG*CGAAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*AAGAA | 1 |
| GUAC*AAGAA | 1 |
| UGUA*GAAG | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_78493.1 | Only in the child motif |
|---|---|---|---|
| IL_78493.2 Compare | IL_1S72_063, IL_2ZJR_064 | IL_2ZJR_026 | IL_3F1H_065 |
| IL_57193.1 Compare | IL_2ZJR_026 | IL_1S72_063, IL_2ZJR_064 | IL_1FJG_053 |
Coloring options: