Motif IL_59016.1 Version IL_59016.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1QBP_005 | 1QBP | 0.9102 | 0 | C+D | RNA (15-mer) | U | 37 | U | 38 | C | 39 | G | 40 | * | U | 52 | U | 53 | C | 54 | G | 55 | cWW | cWW | ncWW | cWW | |
| 2 | IL_413D_001 | 413D | 0.0000 | 0 | Tandem non-canonical cWW pairs | A | RNA (13-mer) | U | 6 | U | 7 | C | 8 | G | 9 | * | U | 6||||2_555 | U | 7||||2_555 | C | 8||||2_555 | G | 9||||2_555 | cWW | cWW | cWW | cWW |
| 3 | IL_2QBG_046 | 2QBG | 0.2213 | 1 | B | 23S rRNA | G | 1202 | U | 1203 | A | 1204 | G | 1206 | * | U | 1240 | A | 1241 | U | 1242 | C | 1243 | cWW | cwW | ntWW | cWW | |
| 4 | IL_165D_001 | 165D | 0.2931 | 0 | A+B | DNA/RNA (5'-R(*GP*CP*UP*UP*CP*GP*GP*CP*)-D(*(BRU))-3') | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 12 | U | 13 | C | 14 | G | 15 | cWW | cWW | cWW | cWW | |
| 5 | IL_1QBP_002 | 1QBP | 0.2996 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (15-mer) | U | 7 | U | 8 | C | 9 | G | 10 | * | U | 22 | U | 23 | C | 24 | G | 25 | cWW | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCG*UUCG | 4 |
| GUAAG*UAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*UC | 4 |
| UAA*AU | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_59016.1 | Only in the parent motif |
|---|---|---|---|
| IL_91286.1 Compare | IL_1QBP_002, IL_165D_001, IL_1QBP_005, IL_413D_001 | IL_2QBG_046 | IL_2PN4_009, IL_2NOK_004, IL_255D_001, IL_3O58_083, IL_2PN4_004, IL_2ZZM_001, IL_280D_002, IL_3O30_046, IL_280D_001, IL_3O30_048, IL_2QBG_041, IL_1QBP_008, IL_2XZM_091, IL_1D4R_001, IL_1D4R_003, IL_2ZJR_040, IL_3O58_056, IL_1UN6_003, IL_3O58_055, IL_3O58_123, IL_402D_001, IL_2XZM_045, IL_2XZM_044, IL_1GID_008, IL_3O58_152, IL_1JID_002, IL_1MFQ_004, IL_1GID_001, IL_1S72_018, IL_2XZM_002, IL_1S72_012, IL_2XZM_008, IL_2XZM_088, IL_3O30_047, IL_422D_001 |
| IL_99404.1 Compare | IL_2QBG_046 | IL_1QBP_002, IL_165D_001, IL_1QBP_005, IL_413D_001 | IL_2QBG_055 |
Children motifs
| Child motif | Common motif instances | Only in IL_59016.1 | Only in the child motif |
|---|---|---|---|
| IL_02809.1 Compare | IL_1QBP_002, IL_165D_001 | IL_2QBG_046, IL_413D_001, IL_1QBP_005 | IL_4ERD_002, IL_3V7E_009, IL_3NPB_007, IL_3GX5_004, IL_4AOB_004, IL_422D_001 |
| IL_82601.1 Compare | IL_413D_001 | IL_1QBP_002, IL_2QBG_046, IL_1QBP_005, IL_165D_001 | |
| IL_78674.1 Compare | IL_2QBG_046 | IL_1QBP_002, IL_165D_001, IL_413D_001, IL_1QBP_005 | IL_3BNQ_005 |
- Annotations
-
- (3)
- Tandem non-canonical cWW pairs (2)
- Basepair signature
- 08_cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.40 | Max 0.95
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