Motif IL_79143.1 Version IL_79143.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-4 | 1-6 | 2-3 | 2-5 | 4-5 | 4-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U9S_004 | 1U9S | 0.0000 | 0 | Major groove minor groove platform; mini C-loop | A | C | 133 | G | 134 | * | C | 164 | A | 165 | A | 166 | G | 167 | ncBW | cWW | cWW | cSH | ||
| 2 | IL_1FJG_025 | 1FJG | 0.6334 | 0 | Major groove minor groove platform; mini C-loop (H) | A | G | 597 | U | 598 | * | A | 640 | U | 641 | A | 642 | C | 643 | cWW | cWW | cSH | ncSH | ||
| 3 | IL_3O30_040 | 3O30 | 0.6441 | 0 | 1 | A | 746 | C | 747 | * | G | 802 | A | 803 | A | 804 | U | 805 | cWW | cWW | |||||
| 4 | IL_1S72_068 | 1S72 | 0.7006 | 0 | Major groove minor groove platform; mini C-loop (H) | 0 | A | 1934 | C | 1935 | * | G | 1902 | U | 1903 | A | 1904 | U | 1905 | cWW | cWW | ||||
| 5 | IL_1U9S_005 | 1U9S | 0.8746 | 0 | Minor groove platform, major groove intercalation | A | G | 161 | G | 162 | * | C | 136 | A | 137 | G | 138 | C | 139 | cWW | cWW | ntSH | |||
| 6 | IL_2QBG_074 | 2QBG | 0.6440 | 0 | B | C | 1893 | C | 1894 | * | G | 1846 | A | 1847 | A | 1848 | G | 1849 | cWW | cWW | ncSW | ||||
| 7 | IL_3PYO_063 | 3PYO | 0.6326 | 0 | A | C | 1902 | G | 1903 | * | C | 1837 | C | 1838 | G | 1839 | G | 1840 | cWW | cWW | ntSH | ||||
| 8 | IL_2ZJR_069 | 2ZJR | 0.7239 | 0 | Major groove minor groove platform; mini C-loop (H) | X | C | 1876 | C | 1877 | * | G | 1838 | A | 1839 | A | 1840 | G | 1841 | cWW | cWW | ntSH | |||
| 9 | IL_1U9S_002 | 1U9S | 0.8496 | 1 | Major groove intercalation | A | C | 228 | C | 229 | * | G | 111 | A | 112 | A | 114 | G | 115 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GAAG | 2 |
| CG*CAAG | 1 |
| GU*AUAC | 1 |
| AC*GAAU | 1 |
| AC*GUAU | 1 |
| GG*CAGC | 1 |
| CG*CCGG | 1 |
| CC*GAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 4 |
| *UA | 2 |
| *AG | 1 |
| *CG | 1 |
| *AAA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_79143.1 | Only in the parent motif |
|---|---|---|---|
| IL_17977.2 Compare | IL_1S72_068, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2ZJR_069 | IL_3PYO_063, IL_1U9S_005, IL_3O30_040, IL_2QBG_074 | IL_1S03_003, IL_1I6U_002, IL_1S72_101, IL_1S03_007, IL_1I6U_004 |
| IL_53918.3 Compare | IL_1U9S_005 | IL_3PYO_063, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_3O30_040, IL_2ZJR_069 | IL_1S72_060, IL_2ZJR_061 |
Children motifs
| Child motif | Common motif instances | Only in IL_79143.1 | Only in the child motif |
|---|---|---|---|
| IL_92027.1 Compare | IL_1U9S_005, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_2ZJR_069 | IL_3PYO_063, IL_3O30_040 | IL_1S03_003, IL_1S72_101, IL_1S03_007, IL_3Q1Q_005, IL_1I6U_002, IL_1I6U_004, IL_4A1C_006, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_3U5H_091 |
- Annotations
-
- Major groove minor groove platform; mini C-loop (H) (3)
- (3)
- Major groove intercalation (1)
- Major groove minor groove platform; mini C-loop (1)
- Minor groove platform, major groove intercalation (1)
- Basepair signature
- Heat map statistics
- Min 0.28 | Avg 0.53 | Max 0.87
Coloring options: