Motif IL_80007.14 Version IL_80007.14 of this group appears in releases 3.48 to 3.53
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | 2-4 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_6CYT_001 | 6CYT | 0.4311 | 1 | Single bulged A | N | RNA (17-mer) | C | 29 | C | 30 | * | G | 34 | G | 36 | cWW | cWW | |
2 | IL_5TBW_058 | 5TBW | 0.5319 | 1 | Single bulged A | 1 | LSU rRNA | C | 1420 | G | 1421 | * | C | 1385 | G | 1387 | cWW | cWW | |
3 | IL_5J7L_049 | 5J7L | 0.2941 | 1 | Single bulged A | AA | SSU rRNA | U | 1060 | G | 1061 | * | C | 1195 | A | 1197 | cWW | cWW | |
4 | IL_1MFQ_005 | 1MFQ | 0.4143 | 1 | Single bulged A | A | SRP RNA | G | 175 | G | 177 | * | C | 220 | C | 221 | cWW | cWW | |
5 | IL_4R4V_003 | 4R4V | 0.3504 | 1 | Single bulged A | A | VS ribozyme RNA | C | 651 | G | 653 | * | C | 766 | G | 767 | cWW | cWW | |
6 | IL_4R4V_009 | 4R4V | 0.3504 | 1 | Single bulged A | A | VS ribozyme RNA | C | 651||||7_556 | G | 653||||7_556 | * | C | 766||||7_556 | G | 767||||7_556 | cWW | cWW | |
7 | IL_4WF9_006 | 4WF9 | 0.3050 | 1 | Single bulged A | X | LSU rRNA | C | 175 | G | 177 | * | C | 152 | G | 153 | cWW | cWW | |
8 | IL_4PHY_004 | 4PHY | 0.3306 | 1 | Single bulged A | A+B | RNA (26-MER) + RNA (20-mer) | C | 20 | C | 22 | * | G | 30 | G | 31 | cWW | cWW | |
9 | IL_5J7L_344 | 5J7L | 0.2191 | 1 | Single bulged A | DA | LSU rRNA | C | 2601 | G | 2603 | * | C | 2591 | G | 2592 | cWW | cWW | |
10 | IL_4V9F_090 | 4V9F | 0.1730 | 1 | Single bulged A | 0 | LSU rRNA | C | 2636 | G | 2638 | * | C | 2626 | G | 2627 | cWW | cWW | |
11 | IL_5TBW_113 | 5TBW | 0.1927 | 1 | Single bulged A | 1 | LSU rRNA | C | 2970 | G | 2972 | * | C | 2960 | G | 2961 | cWW | cWW | |
12 | IL_4V88_452 | 4V88 | 0.2635 | 1 | Single bulged A | A6 | SSU rRNA | C | 1426 | G | 1428 | * | C | 1280 | G | 1281 | cWW | cWW | |
13 | IL_2QUX_002 | 2QUX | 0.2699 | 1 | Single bulged A | F | RNA (25-MER) | C | 5 | G | 7 | * | C | 20 | G | 21 | cWW | cWW | |
14 | IL_4V9F_064 | 4V9F | 0.2018 | 1 | Single bulged A | 0 | LSU rRNA | C | 2021 | G | 2023 | * | C | 1826 | G | 1827 | cWW | cWW | |
15 | IL_4R4V_010 | 4R4V | 0.2512 | 1 | Single bulged A | A | VS ribozyme RNA | U | 712||||7_556 | G | 714||||7_556 | * | C | 660||||7_556 | A | 661||||7_556 | cWW | cWW | |
16 | IL_4R4V_004 | 4R4V | 0.2512 | 1 | Single bulged A | A | VS ribozyme RNA | U | 712 | G | 714 | * | C | 660 | A | 661 | cWW | cWW | |
17 | IL_5TBW_060 | 5TBW | 0.4068 | 1 | Single bulged A | 1 | LSU rRNA | U | 1398 | G | 1400 | * | C | 1411 | G | 1412 | cWW | cWW | |
18 | IL_4Y4O_210 | 4Y4O | 0.3103 | 1 | Single bulged A | 2A | LSU rRNA | U | 895 | C | 897 | * | G | 880 | G | 881 | cWW | cWW | |
19 | IL_4PHY_002 | 4PHY | 0.2417 | 1 | Single bulged A | B+A | RNA (20-mer) | G | 38 | G | 40 | * | C | 12 | C | 13 | cWW | cWW | |
20 | IL_4P43_003 | 4P43 | 0.1537 | 1 | Single bulged A | A+B | RNA (23-mer) | A | 17 | G | 19 | * | C | 30 | U | 31 | cWW | cWW | |
21 | IL_4P43_002 | 4P43 | 0.1307 | 1 | Single bulged A | B+A | RNA (23-mer) | A | 40 | G | 42 | * | C | 7 | U | 8 | cWW | cWW | |
22 | IL_5FJC_001 | 5FJC | 0.1512 | 1 | Single bulged A | A | SAM-I riboswitch | G | 13 | G | 15 | * | C | 40 | C | 41 | cWW | cWW | |
23 | IL_5J7L_002 | 5J7L | 0.1422 | 1 | Single bulged A | AA | SSU rRNA | C | 396 | U | 398 | * | A | 44 | G | 45 | cWW | cWW | |
24 | IL_5TBW_098 | 5TBW | 0.1397 | 1 | Single bulged A | 1 | LSU rRNA | C | 2625 | C | 2627 | * | G | 2614 | G | 2615 | cWW | cWW | |
25 | IL_1JZV_002 | 1JZV | 0.1707 | 1 | Single bulged A | B+A | RNA (9-mer) | U | 12 | C | 14 | * | G | 4 | A | 5 | cWW | cWW | |
26 | IL_4V9F_079 | 4V9F | 0.1569 | 1 | Single bulged A | 0 | LSU rRNA | U | 2290 | C | 2292 | * | G | 2279 | A | 2280 | cWW | cWW | |
27 | IL_1U63_004 | 1U63 | 0.1774 | 1 | Single bulged A | D | 49 NT FRAGMENT OF MRNA FOR L1 | G | 28 | A | 30 | * | U | 16 | C | 17 | cWW | cWW | |
28 | IL_4AOB_006 | 4AOB | 0.1393 | 1 | Single bulged A | A | SAM-I riboswitch | G | 13||||7_555 | G | 15||||7_555 | * | C | 40||||7_555 | C | 41||||7_555 | cWW | cWW | |
29 | IL_4AOB_001 | 4AOB | 0.1393 | 1 | Single bulged A | A | SAM-I riboswitch | G | 13 | G | 15 | * | C | 40 | C | 41 | cWW | cWW | |
30 | IL_5AOX_002 | 5AOX | 0.0000 | 1 | Single bulged A | C | ALU JO CONSENSUS RNA | G | 56 | G | 58 | * | C | 108 | C | 109 | cWW | cWW | |
31 | IL_1I9X_001 | 1I9X | 0.1754 | 1 | Single bulged A | A+B | RNA (13-mer) | U | 4 | A | 6 | * | U | 9 | A | 10 | cWW | cWW | |
32 | IL_1I9X_002 | 1I9X | 0.1788 | 1 | Single bulged A | B+A | RNA (13-mer) | U | 4 | A | 6 | * | U | 9 | A | 10 | cWW | cWW | |
33 | IL_2C4Q_005 | 2C4Q | 0.2727 | 1 | Single bulged A | R | RNA (19-mer) | C | 14||||P_P | C | 15||||P_P | * | G | 5||||P_P | G | 7||||P_P | cWW | cWW | |
34 | IL_2C4Q_001 | 2C4Q | 0.2727 | 1 | Single bulged A | R | RNA (19-mer) | C | 14||||P_1 | C | 15||||P_1 | * | G | 5||||P_1 | G | 7||||P_1 | cWW | cWW | |
35 | IL_6D3P_002 | 6D3P | 0.2761 | 1 | Single bulged A | A | RNA (45-MER) | C | 12||||12_566 | C | 13||||12_566 | * | G | 27||||12_566 | G | 29||||12_566 | cWW | cWW | |
36 | IL_6D3P_004 | 6D3P | 0.2761 | 1 | Single bulged A | A | RNA (45-MER) | C | 12 | C | 13 | * | G | 27 | G | 29 | cWW | cWW | |
37 | IL_7KGA_002 | 7KGA | 0.3263 | 1 | Single bulged A | A | Flavivirus DB element | C | 14 | A | 15 | * | U | 39 | G | 41 | cWW | cWW | |
38 | IL_5TBW_024 | 5TBW | 0.3162 | 1 | Single bulged A | 1 | LSU rRNA | C | 752 | C | 753 | * | G | 779 | G | 781 | cWW | cWW | |
39 | IL_4LGT_002 | 4LGT | 0.2996 | 1 | Single bulged A | E | stem-loop of 23S rRNA | C | 2591 | G | 2592 | * | C | 2601 | G | 2603 | cWW | cWW | |
40 | IL_6MSF_001 | 6MSF | 0.3110 | 1 | Single bulged A | R | RNA (14-mer) | G | 12||||P_1 | G | 13||||P_1 | * | C | 2||||P_1 | C | 4||||P_1 | cWW | cWW | |
41 | IL_6MSF_003 | 6MSF | 0.3110 | 1 | Single bulged A | R | RNA (14-mer) | G | 12||||P_P | G | 13||||P_P | * | C | 2||||P_P | C | 4||||P_P | cWW | cWW | |
42 | IL_3MJA_001 | 3MJA | 0.3031 | 1 | Single bulged A | B | Domain 3 of the cricket paralysis virus intergenic region IRES RNA | C | 6194 | G | 6195 | * | C | 6181 | G | 6183 | cWW | cWW | |
43 | IL_5TBW_372 | 5TBW | 0.2601 | 1 | Single bulged A | AS | 5S rRNA | C | 15 | U | 16 | * | A | 63 | G | 65 | cWW | cWW | |
44 | IL_4P3U_008 | 4P3U | 0.2343 | 1 | Single bulged A | C+D | RNA (23-mer) | C | 7 | U | 8 | * | A | 40 | G | 42 | cWW | cWW | |
45 | IL_4P3U_011 | 4P3U | 0.1642 | 1 | Single bulged A | C+D | RNA (23-mer) | A | 17 | G | 19 | * | C | 30 | U | 31 | cWW | cWW | |
46 | IL_6WPI_001 | 6WPI | 0.1631 | 1 | Single bulged A | B | RNA (47-MER) | G | 11 | A | 13 | * | U | 41 | C | 42 | cWW | cWW | |
47 | IL_4P3U_005 | 4P3U | 0.2195 | 1 | Single bulged A | B+A | RNA (23-mer) | C | 30 | U | 31 | * | A | 17 | G | 19 | cWW | cWW | |
48 | IL_4P3U_002 | 4P3U | 0.3061 | 1 | Single bulged A | B+A | RNA (23-mer) | A | 40 | G | 42 | * | C | 7 | U | 8 | cWW | cWW | |
49 | IL_3V7E_001 | 3V7E | 0.4109 | 1 | Single bulged A | C | SAM-I riboswitch | C | 40 | C | 41 | * | G | 13 | G | 15 | cWW | cWW | |
50 | IL_3OXE_001 | 3OXE | 0.4424 | 1 | Single bulged A | A | domain II of glycine riboswitch | U | 27 | C | 28 | * | G | 12 | A | 14 | cWW | cWW | |
51 | IL_4Y4O_196 | 4Y4O | 0.3518 | 1 | Single bulged A | 2A | LSU rRNA | C | 697 | C | 698 | * | G | 763 | G | 765 | cWW | cWW | |
52 | IL_7A0S_016 | 7A0S | 0.3180 | 1 | Single bulged A | X | LSU rRNA | C | 710 | C | 711 | * | G | 776 | G | 778 | cWW | cWW | |
53 | IL_4Y4O_235 | 4Y4O | 0.3811 | 1 | Single bulged A | 2A | LSU rRNA | C | 1450|||A | C | 1451 | * | G | 1459 | G | 1461 | cWW | cWW | |
54 | IL_4WF9_022 | 4WF9 | 0.4153 | 1 | Single bulged A | X | LSU rRNA | U | 742 | C | 743 | * | G | 808 | A | 810 | cWW | cWW | |
55 | IL_5TBW_082 | 5TBW | 0.3303 | 1 | Single bulged A | 1 | LSU rRNA | G | 2323 | G | 2325 | * | C | 2128 | U | 2129 | cWW | cWW | |
56 | IL_2VPL_002 | 2VPL | 0.2054 | 1 | Single bulged A | B | FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE | G | 28 | A | 30 | * | U | 16 | C | 17 | cWW | cWW | |
57 | IL_4WF9_002 | 4WF9 | 0.2622 | 1 | Single bulged A | X | LSU rRNA | G | 488 | C | 490 | * | G | 36 | C | 37 | cWW | cWW | |
58 | IL_5J7L_246 | 5J7L | 0.2597 | 1 | Single bulged A | DA | LSU rRNA | G | 442 | C | 444 | * | G | 36 | C | 37 | cWW | cWW | |
59 | IL_4Y4O_180 | 4Y4O | 0.3222 | 1 | Single bulged A | 2A | LSU rRNA | G | 442 | C | 444 | * | G | 36 | C | 37 | cWW | cWW | |
60 | IL_7A0S_002 | 7A0S | 0.3182 | 1 | Single bulged A | X | LSU rRNA | G | 454 | C | 456 | * | G | 36 | C | 37 | cWW | cWW | |
61 | IL_1NBS_005 | 1NBS | 0.3314 | 1 | Single bulged A | B | RNase P class B | G | 129 | C | 131 | * | G | 113 | C | 114 | cWW | cWW | |
62 | IL_7A0S_012 | 7A0S | 0.4199 | 1 | Single bulged A | X | LSU rRNA | G | 600 | C | 602 | * | G | 678 | C | 679 | cWW | cWW | |
63 | IL_4WF9_068 | 4WF9 | 0.5266 | 1 | Single bulged A | X | LSU rRNA | G | 2007 | U | 2009 | * | G | 1797 | C | 1798 | cWW | cWW | |
64 | IL_7A0S_064 | 7A0S | 0.5295 | 1 | Single bulged A | X | LSU rRNA | G | 1963 | U | 1965 | * | G | 1761 | C | 1762 | cWW | cWW | |
65 | IL_5J7L_312 | 5J7L | 0.5213 | 1 | Single bulged A | DA | LSU rRNA | G | 1980 | U | 1982 | * | G | 1770 | C | 1771 | cWW | cWW | |
66 | IL_5J7L_261 | 5J7L | 0.5802 | 1 | Single bulged A | DA | LSU rRNA | G | 697 | C | 698 | * | G | 763 | C | 765 | cWW | cWW | |
67 | IL_4Y4O_242 | 4Y4O | 0.4604 | 1 | Single bulged A | 2A | LSU rRNA | G | 1980 | C | 1982 | * | G | 1770 | C | 1771 | cWW | cWW | |
68 | IL_4V9F_002 | 4V9F | 0.3698 | 1 | Single bulged A | 0 | LSU rRNA | G | 448 | C | 450 | * | G | 33 | C | 34 | cWW | cWW | |
69 | IL_5TBW_123 | 5TBW | 0.3273 | 1 | Single bulged A | 1 | LSU rRNA | G | 3177 | U | 3179 | * | A | 3210 | C | 3211 | cWW | cWW | |
70 | IL_1U9S_001 | 1U9S | 0.4072 | 1 | Single bulged A | A | RIBONUCLEASE P | G | 107 | C | 109 | * | G | 95 | C | 96 | cWW | cWW | |
71 | IL_1CSL_002 | 1CSL | 0.4140 | 1 | Single bulged A | B+A | RNA (15-mer) | G | 67 | C | 69 | * | G | 50 | C | 51 | cWW | cWW | |
72 | IL_1DUQ_002 | 1DUQ | 0.3870 | 1 | Single bulged A | B+A | THE REV BINDING ELEMENT | G | 120 | C | 122 | * | G | 108 | C | 109 | cWW | cWW | |
73 | IL_5TBW_013 | 5TBW | 0.4651 | 1 | Single bulged A | 1+4 | LSU rRNA + 5.8S rRNA | G | 337 | C | 339 | * | G | 25 | U | 26 | cWW | cWW | |
74 | IL_4LFB_002 | 4LFB | 0.4567 | 1 | Single bulged A | A | SSU rRNA | G | 396 | C | 398 | * | G | 44 | U | 45 | cWW | cWW | |
75 | IL_6CZR_114 | 6CZR | 0.5613 | 1 | Single bulged A | 1a | SSU rRNA | G | 392 | C | 394 | * | G | 45 | U | 46 | cWW | cWW | |
76 | IL_4Y4O_224 | 4Y4O | 0.4084 | 1 | Single bulged A | 2A | LSU rRNA | G | 1219 | C | 1221 | * | G | 1229 | C | 1230 | cWW | cWW | |
77 | IL_4V88_399 | 4V88 | 0.3440 | 1 | Single bulged A | A6 | SSU rRNA | A | 265 | U | 267 | * | A | 288 | U | 289 | cWW | cWW | |
78 | IL_5WWT_001 | 5WWT | 0.3605 | 1 | Single bulged A | C | tRNA | G | 37 | U | 39 | * | A | 31 | C | 32 | cWW | cWW | |
79 | IL_4V88_409 | 4V88 | 0.3864 | 1 | Single bulged A | A6 | SSU rRNA | A | 505 | U | 507 | * | A | 481 | U | 482 | cWW | cWW | ncWS |
80 | IL_7KGA_005 | 7KGA | 0.3913 | 1 | Single bulged A | B | Flavivirus DB element | U | 39 | G | 41 | * | C | 14 | A | 15 | cWW | cWW | |
81 | IL_6CZR_147 | 6CZR | 0.4111 | 1 | Single bulged A | 1a | SSU rRNA | U | 1376 | C | 1378 | * | G | 900 | A | 901 | cWW | cWW | |
82 | IL_5J7L_039 | 5J7L | 0.3785 | 1 | Single bulged A | AA | SSU rRNA | U | 1393 | C | 1395 | * | G | 922 | A | 923 | cWW | cWW | |
83 | IL_4LFB_035 | 4LFB | 0.3941 | 1 | Single bulged A | A | SSU rRNA | U | 1393 | C | 1395 | * | G | 922 | A | 923 | cWW | cWW | |
84 | IL_4V88_441 | 4V88 | 0.3805 | 1 | Single bulged A | A6 | SSU rRNA | U | 1630 | C | 1632 | * | G | 1146 | A | 1147 | cWW | cWW | |
85 | IL_5TBW_045 | 5TBW | 0.3788 | 1 | Single bulged A | 1 | LSU rRNA | U | 1074 | C | 1076 | * | G | 1083 | A | 1084 | cWW | cWW | |
86 | IL_4V9F_098 | 4V9F | 0.3237 | 1 | Single bulged A | 0 | LSU rRNA | C | 2895 | C | 2897 | * | G | 2860 | G | 2861 | cWW | cWW | |
87 | IL_5FDV_111 | 5FDV | 0.5168 | 1 | Single bulged A | 1B | 5S rRNA | C | 65 | G | 67 | * | C | 17 | G | 18 | cWW | cWW | |
88 | IL_4V9F_101 | 4V9F | 0.5078 | 1 | Major groove intercalation | 9 | 5S rRNA | C | 64 | G | 66 | * | C | 15 | G | 16 | cWW | cWW | |
89 | IL_5J7L_302 | 5J7L | 0.4651 | 1 | Single bulged A | DA | LSU rRNA | C | 1489 | G | 1491 | * | C | 1499 | G | 1500 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAG*CG | 12 |
GAC*GC | 12 |
CC*GAG | 10 |
UAC*GA | 7 |
GAG*CC | 6 |
AAG*CU | 4 |
CG*CAG | 3 |
CAC*GG | 3 |
UAG*CA | 3 |
GAA*UC | 3 |
CU*AAG | 3 |
GAU*GC | 3 |
GAC*GU | 3 |
UAA*UA | 2 |
GG*CAC | 2 |
UC*GAA | 2 |
GAU*AC | 2 |
AAU*AU | 2 |
UG*CAA | 1 |
UAG*CG | 1 |
UAC*GG | 1 |
CAU*AG | 1 |
CA*UAG | 1 |
GAG*CU | 1 |
GC*GAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A* | 66 |
*A | 23 |
- Annotations
-
- Single bulged A (88)
- Major groove intercalation (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.04 | Avg 0.41 | Max 0.98
Coloring options: