Motif IL_80348.2 Version IL_80348.2 of this group appears in releases 1.9 to 1.11
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4IOA_023 | 4IOA | 0.0000 | 0 | X | LSU rRNA | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW |
2 | IL_3U5F_020 | 3U5F | 0.6840 | 3 | 6 | 18S rRNA | U | 345 | G | 346 | * | U | 318 | U | 319 | A | 323 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UG*UUA | 1 |
UG*UUUCGA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*U | 1 |
*UUCG | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_80348.2 | Only in the parent motif |
---|---|---|---|
IL_80348.1 Compare | IL_4IOA_023, IL_3U5F_020 | IL_1FJG_012 |
Children motifs
Child motif | Common motif instances | Only in IL_80348.2 | Only in the child motif |
---|---|---|---|
IL_80348.3 Compare | IL_4IOA_023, IL_3U5F_020 | IL_1FJG_012 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.68 | Avg 0.34 | Max 0.68
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