Motif IL_80652.1 Version IL_80652.1 of this group appears in releases 0.6 to 1.18

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9		10		11		12		13	1-13	2-8	3-10	4-7	5-6	9-11
1	IL_2QBG_100	2QBG	0	1	B	LSU rRNA	C	2636	U	2637	G	2638	A	2639	G	2640	*	C	2774	G	2775	A	2776	G	2777	A	2778	U	2779	A	2781	G	2782	cWW	tWH	tSH	tHS	cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGAG*CGAGAUGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGA*GAGAUGA	1

Release history

Release	0.6	0.7	0.8	0.9	0.10	0.11	0.12	1.0	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14	1.15	1.17	1.18
Date	2012-04-02	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-08	2013-05-04	2013-06-01	2013-07-01	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29	2014-04-27	2014-06-20	2014-09-04	2014-10-07
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_80652.1	Only in the parent motif
IL_94438.1 Compare	IL_2QBG_100		IL_3PYO_089, IL_1S72_089, IL_2ZJR_094

Children motifs

This motif has no children motifs.

Annotations: (1)
Basepair signature: cWW-R-cSH-tWH-tSH-tHS-cWW
Heat map statistics: Min 0.00 | Avg 0.00 | Max 0.00

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Page generated in 1.835 s