Motif IL_82068.1 Version IL_82068.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-3 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ZC7_002 | 4ZC7 | 0.5006 | 0 | B+A | RNA duplex | A | 39 | A | 40 | G | 42 | * | C | 7 | G | 8 | U | 9 | cWW | ncWW | cWW | ||
| 2 | IL_7D7V_003 | 7D7V | 0.3899 | 1 | A | nadA RNA | C | 41 | A | 42 | U | 44 | * | G | 22 | G | 23 | G | 24 | cWW | cWW | cWW | ||
| 3 | IL_7D7W_003 | 7D7W | 0.3566 | 1 | A | 18GAAA (52-MER) | C | 34 | A | 35 | C | 37 | * | G | 23 | G | 24 | G | 25 | cWW | cWW | cWW | ||
| 4 | IL_6TFF_003 | 6TFF | 0.2441 | 1 | A | nadA RNA | C | 34 | A | 35 | C | 37 | * | G | 23 | G | 24 | G | 25 | cWW | cWW | cWW | ||
| 5 | IL_4K31_002 | 4K31 | 0.1889 | 1 | Isolated non-canonical cWW pair | C+B | RNA (23-mer) | A | 16 | A | 17 | G | 19 | * | C | 7 | G | 8 | U | 9 | cWW | cWW | cWW | |
| 6 | IL_4K31_003 | 4K31 | 0.1683 | 1 | Isolated non-canonical cWW pair | B+C | RNA (23-mer) | A | 16 | A | 17 | G | 19 | * | C | 7 | G | 8 | U | 9 | cWW | cWW | cWW | |
| 7 | IL_4WF9_041 | 4WF9 | 0.0000 | 1 | Isolated non-canonical cWW pair | X | LSU rRNA | G | 1075 | A | 1076 | G | 1078 | * | C | 1165 | G | 1166 | C | 1167 | cWW | ncWW | cWW | |
| 8 | IL_7A0S_038 | 7A0S | 0.1013 | 1 | Isolated non-canonical cWW pair | X | LSU rRNA | G | 1042 | A | 1043 | G | 1045 | * | C | 1132 | G | 1133 | C | 1134 | cWW | ncWW | cWW | |
| 9 | IL_5J7L_282 | 5J7L | 0.1071 | 1 | Isolated non-canonical cWW pair | DA | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW | |
| 10 | IL_7RQB_041 | 7RQB | 0.1362 | 1 | Isolated non-canonical cWW pair | 1A | LSU rRNA | G | 1031 | A | 1032 | G | 1034 | * | C | 1121 | G | 1122 | C | 1123 | cWW | cWW | cWW | |
| 11 | IL_4RUM_001 | 4RUM | 0.2328 | 1 | Isolated non-canonical cWW pair | A | NiCo riboswitch RNA | G | 13 | A | 14 | C | 16 | * | G | 88 | A | 89 | C | 90 | cWW | cwW | cWW | |
| 12 | IL_5J7L_009 | 5J7L | 0.3408 | 1 | Isolated non-canonical cWW pair | AA | SSU rRNA | G | 128 | A | 129 | A | 131 | * | U | 231 | G | 232 | C | 233 | cWW | cWW | cWW | |
| 13 | IL_1U6B_001 | 1U6B | 0.3460 | 1 | Isolated non-canonical cWW pair | B | 197-MER | G | 19 | C | 20 | G | 22 | * | C | 29 | A | 30 | C | 31 | cWW | ncWW | cWW | |
| 14 | IL_6E8U_001 | 6E8U | 0.5383 | 3 | Isolated non-canonical cWW pair | B | RNA (37-MER) | A | 6 | A | 7 | A | 11 | * | U | 30 | G | 31 | U | 32 | cWW | cWW | cWW | |
| 15 | IL_8D28_004 | 8D28 | 0.5842 | 3 | B | RNA (33-MER) | C | 20 | C | 21 | G | 25 | * | C | 9 | A | 10 | G | 11 | cWW | cWW | |||
| 16 | IL_5TBW_145 | 5TBW | 0.5303 | 1 | Isolated non-canonical cWW pair | 4 | 5.8S rRNA | U | 93 | C | 94 | A | 96 | * | U | 64 | A | 65 | A | 66 | cWW | ncWW | cWW | |
| 17 | IL_7ELQ_002 | 7ELQ | 0.7100 | 2 | A | NMT1 RNA | C | 32 | C | 33 | G | 36 | * | C | 15 | A | 16 | G | 17 | cWW | ncSW | cWW | ||
| 18 | IL_7DLZ_003 | 7DLZ | 0.6090 | 1 | X | RNA (45-MER) | C | 33 | C | 34 | C | 36 | * | G | 12 | A | 13 | G | 14 | cWW | ncWW | |||
| 19 | IL_4V9F_097 | 4V9F | 0.6666 | 1 | Isolated non-canonical cWW with bulges | 0 | LSU rRNA | G | 2900 | C | 2901 | C | 2903 | * | G | 2855 | A | 2856 | C | 2857 | cWW | ncWW | cWW | |
| 20 | IL_5ML7_010 | 5ML7 | 0.6019 | 1 | Isolated non-canonical cWW with bulges | B | 23S ribosomal RNA | G | 2196 | C | 2197 | A | 2199 | * | U | 2181 | A | 2182 | C | 2183 | cWW | cWW | cWW | |
| 21 | IL_3KTW_002 | 3KTW | 0.6520 | 1 | Isolated non-canonical cWW with bulges | C | SRP RNA | A | 177 | U | 178 | C | 180 | * | G | 152 | G | 153 | U | 154 | cWW | ncSH | cWW | ncWW |
| 22 | IL_5J7L_008 | 5J7L | 0.5725 | 1 | Single bulged G, near cWW | AA | SSU rRNA | U | 92 | U | 93 | C | 95 | * | G | 75 | G | 76 | A | 77 | cWW | ncWWa | ncWW | |
| 23 | IL_5M0H_001 | 5M0H | 0.6126 | 1 | Other IL | A | ASH1 E3 (42 nt-TL/TLR) | A | 4 | A | 5 | U | 7 | * | A | 37 | U | 38 | U | 39 | cWW | cWW | ||
| 24 | IL_7LYF_004 | 7LYF | 0.6818 | 1 | Isolated non-canonical cWW pair | A | tRNA | C | 51 | G | 52 | C | 54 | * | G | 70 | A | 71 | G | 72 | cWW | cWW | cWW | |
| 25 | IL_3TD0_002 | 3TD0 | 0.5396 | 1 | Isolated non-canonical cWW pair | B+A | RNA (23-mer) | G | 39 | A | 40 | G | 42 | * | C | 7 | G | 8 | C | 9 | cWW | cWW | cWW | |
| 26 | IL_3TD0_005 | 3TD0 | 0.4839 | 1 | Isolated non-canonical cWW pair | A+B | RNA (23-mer) | G | 16 | A | 17 | G | 19 | * | C | 30 | G | 31 | C | 32 | cWW | cWW | cWW | |
| 27 | IL_3E5C_001 | 3E5C | 0.5123 | 3 | Isolated non-canonical cWW pair | A | SMK box (SAM-III) Riboswitch | A | 27 | G | 28 | C | 32 | * | G | 12 | A | 13 | U | 14 | cWW | cWW | cWW | |
| 28 | IL_6WBR_001 | 6WBR | 0.5358 | 0 | Isolated non-canonical cWW pair | B | RNA (94-MER) | G | 26 | G | 27 | A | 28 | * | U | 41 | A | 42 | C | 43 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUG*CGC | 4 |
| CAGC*GGG | 2 |
| AAAG*CGU | 2 |
| GAAG*CGC | 2 |
| AAG*CGU | 1 |
| CAGU*GGG | 1 |
| GAGC*GAC | 1 |
| GAAA*UGC | 1 |
| GCCG*CAC | 1 |
| AAGGAA*UGU | 1 |
| CCCUUG*CAG | 1 |
| UCGA*UAA | 1 |
| CCCGG*CAG | 1 |
| CCAC*GAG | 1 |
| GCAC*GAC | 1 |
| GCCA*UAC | 1 |
| AUUC*GGU | 1 |
| UUGC*GGA | 1 |
| AACU*AUU | 1 |
| CGAC*GAG | 1 |
| AGAUGC*GAU | 1 |
| GGA*UAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*G | 5 |
| AU*G | 4 |
| AG*G | 3 |
| CC*A | 2 |
| CA*A | 2 |
| A*G | 1 |
| AG*A | 1 |
| AGGA*G | 1 |
| CCUU*A | 1 |
| CG*A | 1 |
| CCG*A | 1 |
| UU*G | 1 |
| UG*G | 1 |
| AC*U | 1 |
| GA*A | 1 |
| GAUG*A | 1 |
| G*A | 1 |
- Annotations
-
- Isolated non-canonical cWW pair (16)
- (7)
- Isolated non-canonical cWW with bulges (3)
- Single bulged G, near cWW (1)
- Other IL (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.45 | Max 0.88
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