#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-32-43-4
1 IL_1FJG_0511FJG0.00000Not an internal loop (H)A SSU rRNAC1259C1260*G1274A1275G1276cWWntSH
2 IL_2QWY_0092QWY0.74910Minor groove platformCSAM-II riboswitchC23A24*U40A41G42cWWcWWtSH
3 IL_3G78_0053G780.83552AGroup II catalytic intron D1-D4-1G128G129*U234G236U238cWWcWW
4 IL_3F1H_0783F1H0.77561A23S RRNAG2070A2071*U2438C2440C2441cWWcWWncSH
5 IL_2GDI_0072GDI0.69790YTPP riboswitchA35G36*C23C24U25cWWcWWncSH
6 IL_2GDI_0032GDI0.63260Minor groove platformXTPP riboswitchA35G36*C23C24U25cWWcWWncSH
7 IL_2QWY_0032QWY0.70600ASAM-II riboswitchC23A24*U40A41G42cWWcWWtSH
8 IL_1S72_0751S720.61641Minor groove platform (H)0 LSU rRNAG2111A2112*U2473C2475C2476cWWcWWcSH
9 IL_1S72_0351S720.61400Minor groove platform (H)0 LSU rRNAG956A957*U1009C1010C1011cWWcWWcSH
10 IL_2ZJR_0772ZJR0.75351Minor groove platform (H)X LSU rRNAG2053A2054*U2417C2419C2420cWWcWWcSH
11 IL_2QWY_0062QWY0.74310BSAM-II riboswitchC23A24*U40A41G42cWWcWW
12 IL_3F1H_0273F1H0.77360A23S RRNAG862A863*U913C914C915cWWcWWcSH
13 IL_1FJG_0381FJG1.12740Minor groove platform (H)A SSU rRNAG953G954*C1226A1227C1228cWWcWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
CA*UAG3
GA*UACC3
AG*CCU2
GA*UCC2
CC*GAG1
GG*UUGAU1
GG*CAC1
Non-Watson-Crick part of the motif
SequenceCounts
*A5
*C4
*AC3
*UGA1
Annotations
  • (6)
  • Minor groove platform (H) (4)
  • Minor groove platform (2)
  • Not an internal loop (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.10 | Avg 0.43 | Max 1.13
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