Motif IL_84775.1 Version IL_84775.1 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_067 | 2ZJR | 0.7700 | 1 | Minor groove platform, major groove intercalation (H) | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | ntHS | cWW |
| 2 | IL_1S72_066 | 1S72 | 0.7205 | 1 | Minor groove platform, major groove intercalation (H) | 0 | LSU rRNA | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | |
| 3 | IL_3F1H_068 | 3F1H | 0.7536 | 1 | A | 23S RRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | cWW | ||
| 4 | IL_3F1H_056 | 3F1H | 0.0000 | 0 | A | 23S RRNA | G | 1448 | A | 149|||B | G | 1449 | * | C | 1462 | C | 1463 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGG*CG | 2 |
| CCAG*CG | 1 |
| GAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG* | 2 |
| CA* | 1 |
| A* | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_84775.1 | Only in the parent motif |
|---|---|---|---|
| IL_92985.1 Compare | IL_2ZJR_067, IL_3F1H_068, IL_3F1H_056 | IL_1S72_066 | IL_2ZJR_084, IL_3G78_012, IL_3F1H_088 |
| IL_19775.1 Compare | IL_1S72_066 | IL_2ZJR_067, IL_3F1H_068, IL_3F1H_056 | IL_1FJG_039, IL_1FJG_046 |
Children motifs
| Child motif | Common motif instances | Only in IL_84775.1 | Only in the child motif |
|---|---|---|---|
| IL_86058.1 Compare | IL_2ZJR_067, IL_3F1H_068, IL_3F1H_056, IL_1S72_066 | IL_3F1H_031, IL_1S72_033, IL_2ZJR_027, IL_2ZJR_003, IL_1FJG_004, IL_3F1H_070, IL_1FJG_052, IL_1FJG_042 |
- Annotations
-
- Minor groove platform, major groove intercalation (H) (2)
- (2)
- Basepair signature
- Heat map statistics
- Min 0.18 | Avg 0.36 | Max 0.77
Coloring options: