Motif IL_86058.1 Version IL_86058.1 of this group appears in releases 0.3 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 2-5 | 3-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2ZJR_067 | 2ZJR | 0.1820 | 1 | Major groove outside cWW, minor groove, intercalation pocket (H) | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | ntHS | cWW | |
2 | IL_1S72_066 | 1S72 | 0.0000 | 1 | Major groove outside cWW, minor groove, intercalation pocket (H) | 0 | LSU rRNA | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | ||
3 | IL_3F1H_056 | 3F1H | 0.1985 | 0 | A | 23S RRNA | G | 1448 | A | 149|||B | G | 1449 | * | C | 1462 | C | 1463 | cWW | cWW | |||
4 | IL_1FJG_052 | 1FJG | 0.6083 | 0 | A | SSU rRNA | C | 1260 | A | 1261 | C | 1262 | * | G | 1273 | G | 1274 | tHS | cWW | |||
5 | IL_1FJG_042 | 1FJG | 0.5557 | 2 | Minor groove platform (H) | A | SSU rRNA | U | 1199 | G | 1202 | C | 1203 | * | G | 1057 | G | 1058 | cWW | tHS | cWW | |
6 | IL_1FJG_004 | 1FJG | 0.5933 | 0 | Minor groove platform (H) | A | SSU rRNA | C | 54 | A | 55 | U | 56 | * | A | 356 | G | 357 | cWW | tHS | cWW | |
7 | IL_3F1H_068 | 3F1H | 0.3937 | 1 | A | 23S RRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | cWW | |||
8 | IL_1S72_033 | 1S72 | 0.5347 | 0 | Single bulged A (H) | 0 | LSU rRNA | U | 942 | A | 943 | G | 944 | * | C | 1023 | G | 1024 | ncSH | cWW | cWW | |
9 | IL_2ZJR_003 | 2ZJR | 0.7205 | 0 | Minor groove platform (H) | X | LSU rRNA | U | 447 | C | 448 | C | 449 | * | G | 42 | A | 43 | ncSH | cWW | cWW | |
10 | IL_3F1H_070 | 3F1H | 0.7419 | 1 | A | 23S RRNA | G | 1846 | A | 1848 | G | 1849 | * | C | 1893 | C | 1894 | cWW | ncWS | cWW | ||
11 | IL_2ZJR_027 | 2ZJR | 0.6579 | 0 | Minor groove platform (H) | X | LSU rRNA | U | 925 | C | 926 | C | 927 | * | G | 875 | A | 876 | ncSH | cWW | cWW | |
12 | IL_3F1H_031 | 3F1H | 0.9027 | 0 | A | 23S RRNA | U | 877 | A | 878 | G | 879 | * | C | 898 | A | 899 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CCGG*CG | 2 |
UCC*GA | 2 |
CCAG*CG | 1 |
GAG*CC | 1 |
CAC*GG | 1 |
UCAGC*GG | 1 |
CAU*AG | 1 |
UAG*CG | 1 |
GAAG*CC | 1 |
UAG*CA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A* | 5 |
CG* | 2 |
C* | 2 |
CA* | 1 |
CAG* | 1 |
AA* | 1 |
Release history
Release | 0.3 |
---|---|
Date | 2011-12-08 |
Status | New id, 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_86058.1 | Only in the parent motif |
---|---|---|---|
IL_69966.2 Compare | IL_3F1H_031, IL_1S72_033, IL_2ZJR_027, IL_2ZJR_003, IL_1FJG_004, IL_3F1H_070, IL_1FJG_052, IL_1FJG_042 | IL_2ZJR_067, IL_3F1H_068, IL_3F1H_056, IL_1S72_066 | IL_3F1H_027, IL_1S72_075, IL_2QWY_009, IL_1FJG_038, IL_1S72_035, IL_3G78_005, IL_2QWY_006, IL_1FJG_051, IL_2GDI_007, IL_2QWY_003, IL_3F1H_078, IL_2ZJR_077, IL_2GDI_003 |
IL_84775.1 Compare | IL_2ZJR_067, IL_3F1H_068, IL_3F1H_056, IL_1S72_066 | IL_3F1H_031, IL_1S72_033, IL_2ZJR_027, IL_2ZJR_003, IL_1FJG_004, IL_3F1H_070, IL_1FJG_052, IL_1FJG_042 |
Children motifs
Child motif | Common motif instances | Only in IL_86058.1 | Only in the child motif |
---|---|---|---|
IL_87014.1 Compare | IL_3F1H_068, IL_2ZJR_027, IL_2ZJR_003, IL_3F1H_056, IL_2ZJR_067, IL_1S72_066 | IL_3F1H_031, IL_1S72_033, IL_1FJG_004, IL_3F1H_070, IL_1FJG_052, IL_1FJG_042 | IL_1FJG_039, IL_1FJG_051 |
IL_83385.2 Compare | IL_3F1H_031, IL_1S72_033, IL_1FJG_004, IL_3F1H_070, IL_1FJG_052, IL_1FJG_042 | IL_3F1H_068, IL_2ZJR_027, IL_2ZJR_003, IL_3F1H_056, IL_2ZJR_067, IL_1S72_066 | IL_3F1H_027, IL_1S72_075, IL_3G78_005, IL_1FJG_038, IL_1S72_035, IL_2QWY_009, IL_2QWY_006, IL_2GDI_007, IL_2QWY_003, IL_3F1H_078, IL_2ZJR_077, IL_2GDI_003 |
- Annotations
-
- (5)
- Minor groove platform (H) (4)
- Major groove outside cWW, minor groove, intercalation pocket (H) (2)
- Single bulged A (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.18 | Avg 0.52 | Max 0.90
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