#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_2ZJR_0672ZJR0.18201Major groove outside cWW, minor groove, intercalation pocket (H)X LSU rRNAC1829G1831G1832*C1885G1886cWWntHScWW
2 IL_1S72_0661S720.00001Major groove outside cWW, minor groove, intercalation pocket (H)0 LSU rRNAC1893A1895G1896*C1943G1944cWWcWW
3 IL_3F1H_0563F1H0.19850A23S RRNAG1448A149|||BG1449*C1462C1463cWWcWW
4 IL_1FJG_0521FJG0.60830A SSU rRNAC1260A1261C1262*G1273G1274tHScWW
5 IL_1FJG_0421FJG0.55572Minor groove platform (H)A SSU rRNAU1199G1202C1203*G1057G1058cWWtHScWW
6 IL_1FJG_0041FJG0.59330Minor groove platform (H)A SSU rRNAC54A55U56*A356G357cWWtHScWW
7 IL_3F1H_0683F1H0.39371A23S RRNAC1837G1839G1840*C1902G1903cWWcWW
8 IL_1S72_0331S720.53470Single bulged A (H)0 LSU rRNAU942A943G944*C1023G1024ncSHcWWcWW
9 IL_2ZJR_0032ZJR0.72050Minor groove platform (H)X LSU rRNAU447C448C449*G42A43ncSHcWWcWW
10 IL_3F1H_0703F1H0.74191A23S RRNAG1846A1848G1849*C1893C1894cWWncWScWW
11 IL_2ZJR_0272ZJR0.65790Minor groove platform (H)X LSU rRNAU925C926C927*G875A876ncSHcWWcWW
12 IL_3F1H_0313F1H0.90270A23S RRNAU877A878G879*C898A899cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCGG*CG2
UCC*GA2
CCAG*CG1
GAG*CC1
CAC*GG1
UCAGC*GG1
CAU*AG1
UAG*CG1
GAAG*CC1
UAG*CA1
Non-Watson-Crick part of the motif
SequenceCounts
A*5
CG*2
C*2
CA*1
CAG*1
AA*1
Annotations
  • (5)
  • Minor groove platform (H) (4)
  • Major groove outside cWW, minor groove, intercalation pocket (H) (2)
  • Single bulged A (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.18 | Avg 0.52 | Max 0.90
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