Motif IL_92985.1 Version IL_92985.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_067 | 2ZJR | 0.7700 | 1 | Minor groove platform, major groove intercalation (H) | X | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | ntHS | cWW |
| 2 | IL_3F1H_068 | 3F1H | 0.7536 | 1 | A | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | cWW | ||
| 3 | IL_3F1H_056 | 3F1H | 0.0000 | 0 | A | G | 1448 | A | 149|||B | G | 1449 | * | C | 1462 | C | 1463 | cWW | cWW | ||
| 4 | IL_2ZJR_084 | 2ZJR | 0.5088 | 0 | X | C | 2477 | C | 2478 | U | 2479 | * | A | 2432 | G | 2433 | cWW | cWW | ||
| 5 | IL_3F1H_088 | 3F1H | 0.5763 | 0 | A | C | 2498 | C | 2499 | U | 2500 | * | A | 2453 | G | 2454 | cWW | cWW | ||
| 6 | IL_3G78_012 | 3G78 | 0.9578 | 0 | A | C | 296 | A | 297 | U | 298 | * | G | 320 | G | 321 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGG*CG | 2 |
| CCU*AG | 2 |
| GAG*CC | 1 |
| CAU*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG* | 2 |
| A* | 2 |
| C* | 2 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_92985.1 | Only in the child motif |
|---|---|---|---|
| IL_84775.1 Compare | IL_2ZJR_067, IL_3F1H_068, IL_3F1H_056 | IL_2ZJR_084, IL_3G78_012, IL_3F1H_088 | IL_1S72_066 |
| IL_11363.1 Compare | IL_2ZJR_084, IL_3G78_012, IL_3F1H_088 | IL_2ZJR_067, IL_3F1H_068, IL_3F1H_056 | IL_2ZJR_055, IL_2QWY_008, IL_2QEK_002, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1S72_005, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3MOJ_004, IL_1ZX7_001, IL_1S72_079, IL_1T0E_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005, IL_2ZJR_101 |
- Annotations
-
- (5)
- Minor groove platform, major groove intercalation (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.20 | Avg 0.60 | Max 1.12
Coloring options: