Motif IL_19775.1 Version IL_19775.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_046 | 1FJG | 0.0000 | 0 | A | G | 1127 | C | 1128 | * | G | 1143 | G | 1144 | C | 1145 | ncWW | cWW | ||
| 2 | IL_1FJG_039 | 1FJG | 0.9005 | 2 | Minor groove platform (H) | A | A | 1044 | C | 1045 | * | G | 993 | A | 996 | U | 997 | cWW | cWW | cSW |
| 3 | IL_1S72_066 | 1S72 | 0.9475 | 1 | Minor groove platform, major groove intercalation (H) | 0 | C | 1943 | G | 1944 | * | C | 1893 | A | 1895 | G | 1896 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GGC | 1 |
| AC*GACAU | 1 |
| CG*CCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 1 |
| *ACA | 1 |
| *CA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_19775.1 | Only in the child motif |
|---|---|---|---|
| IL_84775.1 Compare | IL_1S72_066 | IL_1FJG_039, IL_1FJG_046 | IL_2ZJR_067, IL_3F1H_068, IL_3F1H_056 |
| IL_90628.1 Compare | IL_1FJG_039 | IL_1FJG_046, IL_1S72_066 | IL_1FJG_037 |
| IL_11363.1 Compare | IL_1FJG_046 | IL_1FJG_039, IL_1S72_066 | IL_2ZJR_055, IL_3F1H_088, IL_2QWY_008, IL_2QEK_002, IL_2QWY_005, IL_1O9M_002, IL_2QWY_002, IL_1O9M_001, IL_1T0E_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3G78_012, IL_3MOJ_004, IL_1S72_079, IL_1ZX7_001, IL_1FJG_057, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003, IL_3F1H_023, IL_3F1H_005, IL_2ZJR_101 |
- Annotations
-
- Minor groove platform (H) (1)
- (1)
- Minor groove platform, major groove intercalation (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.49 | Avg 0.52 | Max 0.95
Coloring options: