#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-53-4
1 IL_3O58_0823O580.86630125S ribosomal RNAU1820U1821C1822*G1623G1624A1625cWWcWW
2 IL_1S72_0621S720.25044Intercalated tWH (H)0 LSU rRNAA1747U1748G1752*C2031U2032U2034cWWcWW
3 IL_2ZJR_0632ZJR0.22584Intercalated tWH (H)X LSU rRNAA1686C1687G1691*C1973U1974U1976cWWcWW
4 IL_2QBG_0652QBG0.23214B23S rRNAA1669C1670G1674*C1990U1991U1993cWWcWW
5 IL_3O58_0953O580.00004125S ribosomal RNAA1901G1902G1906*C2333U2334U2336cWWcWW
6 IL_2XZM_0642XZM0.65570A18S RRNAA1206C1207A1208*U1221U1222U1223cWWntHScWW
7 IL_2QEK_0022QEK0.79201B+AHIV-1 subtype F DIS genomic RNAG7A8G10*C15A16C17cWWcWW
8 IL_3O30_0643O300.88360118S ribosomal RNAA1234C1235A1236*U1249U1250U1251ncWWcWWcWW
9 IL_3LOA_0033LOA0.85191Decoding loop with one bulged AB+ARNA (23-mer)G1491A1493G1494*C1407A1408C1409cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
ACA*UUU2
GAAG*CAC2
GGA*UUC1
AUUCGG*CUGU1
ACUUUG*CUGU1
ACUAGG*CUGU1
AGUCGG*CUGU1
Non-Watson-Crick part of the motif
SequenceCounts
C*U2
AA*A2
G*U1
UUCG*UG1
CUUU*UG1
CUAG*UG1
GUCG*UG1

Release history

Release0.5
Date2011-12-08
Status> 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_95015.1Only in the child motif
IL_47174.1
Compare
IL_2QEK_002, IL_3LOA_003, IL_2QBG_065, IL_2ZJR_063IL_3O30_064, IL_2XZM_064, IL_1S72_062, IL_3O58_095, IL_3O58_082IL_2ZJR_019, IL_3KTW_002, IL_2ZJR_013, IL_2ZJR_010, IL_2AW7_052, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_3UXR_080, IL_3U5H_109, IL_1S72_047, IL_2QBG_020, IL_2XZM_036, IL_2XZM_037, IL_1Z7F_002, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_1ZX7_008, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3GLP_003, IL_1T0E_002, IL_4A1B_041, IL_3U5H_076, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_2XZM_001, IL_4A1B_083, IL_3BNL_004, IL_3MEI_002, IL_3BNL_001, IL_3U5F_087, IL_2ZJR_090, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_2XZM_081, IL_1XJR_003, IL_2QBG_085, IL_2QBG_083, IL_2ZJR_036, IL_2ZJR_030, IL_3TD0_006, IL_3UXR_064, IL_3U5H_028, IL_2XZM_012, IL_3TD0_001, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_3UXR_017, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_2O3V_001, IL_3U5H_087, IL_2XZM_090, IL_3BNQ_006, IL_3UXR_081, IL_1ZX7_004, IL_2ZJR_025, IL_3NJ7_002, IL_1ZX7_002, IL_2Q1R_002, IL_3NJ7_005, IL_4A1B_061, IL_2XZM_069, IL_3BNQ_012, IL_1MFQ_003, IL_3U5H_017, IL_3UXR_059, IL_2XZM_060, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_3UXR_053, IL_4A1C_009, IL_2XZM_034, IL_1FJG_062, IL_3U5F_084, IL_3TD1_006, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_3U5H_022, IL_2XZM_075, IL_3U5F_089, IL_2XZM_072, IL_3BNQ_007, IL_1MFQ_002, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_157D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_3UXR_034, IL_1MZP_001, IL_1T0D_004, IL_3U5H_036, IL_2XZM_043, IL_2AW7_064, IL_3RW6_008, IL_2AW7_062, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_2XZM_020, IL_2ZKO_001, IL_3U5F_015, IL_3RG5_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_4A1B_015, IL_3IVK_002, IL_1YZ9_001, IL_3U5H_008, IL_4A1B_034, IL_3RG5_002, IL_1FJG_006, IL_3U5H_128, IL_2OE5_001, IL_3U5H_121, IL_2XZM_058, IL_3U5F_065, IL_3U5F_063, IL_2ZJR_042, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_3U5H_049, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_3TD0_005, IL_1U6B_005, IL_3UXR_015, IL_4A1B_028, IL_1U6B_001, IL_1ZX7_006, IL_4A1B_027, IL_4A1B_024, IL_3BNQ_001, IL_3U5H_114, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_1UN6_005, IL_3UXR_095, IL_1ZEV_001, IL_3U5H_051, IL_2QBG_034, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_2ZJR_079, IL_4A1B_104, IL_1S72_024, IL_2AW7_063, IL_1S72_095
IL_86357.1
Compare
IL_2XZM_064IL_3LOA_003, IL_3O58_082, IL_2QBG_065, IL_3O30_064, IL_2QEK_002, IL_1S72_062, IL_2ZJR_063, IL_3O58_095IL_2QBG_063, IL_3Q1Q_006, IL_3UXR_062, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_2ZJR_061
IL_99515.1
Compare
IL_1S72_062IL_3LOA_003, IL_3O58_082, IL_2QBG_065, IL_3O30_064, IL_2QEK_002, IL_2XZM_064, IL_2ZJR_063, IL_3O58_095IL_2ZJR_023, IL_4A1B_114, IL_3U5H_110, IL_2QBG_098, IL_2ZJR_092, IL_3U5H_085, IL_1S72_087, IL_3U5H_117, IL_4A1B_081, IL_3UXR_097
Annotations
  • (6)
  • Intercalated tWH (H) (2)
  • Decoding loop with one bulged A (1)
  • Basepair signature
    Heat map statistics
    Min 0.12 | Avg 0.62 | Max 1.00
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