Motif IL_86357.2 Version IL_86357.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XZM_064 | 2XZM | 0.7737 | 0 | A | SSU rRNA | A | 1206 | C | 1207 | A | 1208 | * | U | 1221 | U | 1222 | U | 1223 | cWW | ntHS | cWW | |
| 2 | IL_4A1B_079 | 4A1B | 0.1233 | 0 | 1 | LSU rRNA | A | 1919 | A | 1920 | G | 1921 | * | C | 2333 | C | 2334 | U | 2335 | cWW | tWW | cWW | |
| 3 | IL_3U5H_083 | 3U5H | 0.0000 | 0 | 5 | LSU rRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | |
| 4 | IL_1S72_060 | 1S72 | 0.1147 | 0 | Isolated tWW turn (H) | 0 | LSU rRNA | U | 1741 | A | 1742 | G | 1743 | * | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW |
| 5 | IL_2QBG_063 | 2QBG | 0.1329 | 0 | B | LSU rRNA | G | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | C | 1997 | cWW | tWW | cWW | |
| 6 | IL_2ZJR_061 | 2ZJR | 0.2305 | 0 | Isolated tWW turn (H) | X | LSU rRNA | U | 1680 | A | 1681 | A | 1682 | * | U | 1978 | C | 1979 | A | 1980 | cWW | tWW | cWW |
| 7 | IL_3V2F_062 | 3V2F | 0.2285 | 0 | A | LSU rRNA | C | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | G | 1997 | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAG*CCU | 2 |
| ACA*UUU | 1 |
| UAG*CCA | 1 |
| GAA*UCC | 1 |
| UAA*UCA | 1 |
| CAA*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*C | 6 |
| C*U | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_86357.2 | Only in the parent motif |
|---|---|---|---|
| IL_86357.1 Compare | IL_2QBG_063, IL_4A1B_079, IL_1S72_060, IL_3U5H_083, IL_2XZM_064, IL_2ZJR_061 | IL_3V2F_062 | IL_3Q1Q_006, IL_3UXR_062 |
Children motifs
| Child motif | Common motif instances | Only in IL_86357.2 | Only in the child motif |
|---|---|---|---|
| IL_86357.3 Compare | IL_3U5H_083, IL_1S72_060, IL_2QBG_063, IL_4A1B_079, IL_3V2F_062 | IL_2XZM_064, IL_2ZJR_061 | |
| IL_21304.2 Compare | IL_2XZM_064 | IL_3V2F_062, IL_2QBG_063, IL_4A1B_079, IL_1S72_060, IL_3U5H_083, IL_2ZJR_061 | IL_2XZM_006, IL_2QBG_082, IL_3V2F_079, IL_3U5H_085, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_1S72_062, IL_4A1B_081 |
- Annotations
-
- (5)
- Isolated tWW turn (H) (2)
- Basepair signature
- cWW-tWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.31 | Max 0.81
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