Motif IL_86357.3 Version IL_86357.3 of this group appears in releases 1.1 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3V2F_062 | 3V2F | 0.2285 | 0 | A | 23S Ribosomal RNA | C | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | G | 1997 | cWW | tWW | cWW | |
2 | IL_1S72_060 | 1S72 | 0.1147 | 0 | Isolated tWW turn (H) | 0 | LSU rRNA | U | 1741 | A | 1742 | G | 1743 | * | C | 2036 | C | 2037 | A | 2038 | cWW | tWW | cWW |
3 | IL_3U5H_083 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | A | 1895 | A | 1896 | G | 1897 | * | C | 2338 | C | 2339 | U | 2340 | cWW | tWW | cWW | |
4 | IL_2QBG_063 | 2QBG | 0.1329 | 0 | B | 23S rRNA | G | 1663 | A | 1664 | A | 1665 | * | U | 1995 | C | 1996 | C | 1997 | cWW | tWW | cWW | |
5 | IL_4A1B_079 | 4A1B | 0.1233 | 0 | 1 | 26S RRNA | A | 1919 | A | 1920 | G | 1921 | * | C | 2333 | C | 2334 | U | 2335 | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AAG*CCU | 2 |
CAA*UCG | 1 |
UAG*CCA | 1 |
GAA*UCC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A*C | 5 |
Release history
Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_86357.3 | Only in the parent motif |
---|---|---|---|
IL_86357.2 Compare | IL_3U5H_083, IL_1S72_060, IL_2QBG_063, IL_4A1B_079, IL_3V2F_062 | IL_2XZM_064, IL_2ZJR_061 |
Children motifs
Child motif | Common motif instances | Only in IL_86357.3 | Only in the child motif |
---|---|---|---|
IL_86357.4 Compare | IL_3U5H_083, IL_1S72_060, IL_2QBG_063, IL_4A1B_079 | IL_3V2F_062 | IL_4NVV_065, IL_1VW3_047 |
- Annotations
-
- (4)
- Isolated tWW turn (H) (1)
- Basepair signature
- cWW-tWW-cWW
- Heat map statistics
- Min 0.11 | Avg 0.15 | Max 0.34
Coloring options: